View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_low_23 (Length: 496)
Name: NF0942_low_23
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_23 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 12 - 496
Target Start/End: Complemental strand, 16331598 - 16331114
Alignment:
| Q |
12 |
tggggggtctatggtccaaaaggtctatatttatttctcgtaaaattcttctaccgaaagtaatcttattcgatatgcatcattaaatatgaatatctct |
111 |
Q |
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| T |
16331598 |
tgggtggtctatggtccaaaaggtctatatttatttcttgtaaaattcttctaccgaaagtaatcttattcgatatgcatcattaaatatgaatatctct |
16331499 |
T |
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| Q |
112 |
ttcagccggtgaaacacacaccgttcgtataagtttcaaaagtaacaaccaaatattgaaattgatatagttagaagaatttgatgtagttattatggtt |
211 |
Q |
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| T |
16331498 |
ttcagccggtgaaacacacatccttcgtttaagtttcaaaagtaacaaccaaatattgaaattgatatagttagaataatttgatgtagttattatggtt |
16331399 |
T |
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| Q |
212 |
taaaattgaagtaaattgtttttcttttgagtgaaattgaagtaatttgttgttcactaagaaactcactgatatatagacttacagtatccattgataa |
311 |
Q |
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| T |
16331398 |
taaaattgaagtaaattgtttttcttttgagtgaaattgaagtaatttgttgtttactaagaaactcactgatatatagacttacagtatccattgataa |
16331299 |
T |
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| Q |
312 |
tcgcttttgaggatcccttgtgagacatttttctgctaaacgaatcatccaaaaaagctgatgacaatcataggtatccatcatcctttcatcaattaga |
411 |
Q |
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| T |
16331298 |
tcgcttttgaggatcccttgtgagacatttttctgctaaacgaatcatccaaaaaagctgatgacaatcataggtatccatcatcctttcatcaattaga |
16331199 |
T |
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| Q |
412 |
tctggatagttcctttccttcagtagtggcctggcctgaaaattaagcaagagataaattttttgaaaggaacatgcaaattgca |
496 |
Q |
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| T |
16331198 |
tctggatagttcctttccttcagtagtggcctggcctgaaaattaagcaagagataaattttttgaaaggaacatgcaaattgca |
16331114 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 419
Target Start/End: Original strand, 2969782 - 2969846
Alignment:
| Q |
355 |
atcatccaaaaaagctgatgacaatcataggtatccatcatcctttcatcaattagatctggata |
419 |
Q |
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| T |
2969782 |
atcatccaaaataattgatggtaatcatgagtatcaatgatcctttcatcaattagatctggata |
2969846 |
T |
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