View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0942_low_28 (Length: 466)
Name: NF0942_low_28
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_28 |
 | |
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| [»] chr4 (4 HSPs) |
| |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 218 - 462
Target Start/End: Complemental strand, 12934689 - 12934445
Alignment:
| Q |
218 |
atttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcttgaagtagactttctaccatccaggtcacctgccatatccgc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12934689 |
atttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatatccgc |
12934590 |
T |
|
| Q |
318 |
atctgtgtagcctttcaaaatcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacagcttcccaa |
417 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12934589 |
atctgtgtagcctttcaaaagcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacagcttcccaa |
12934490 |
T |
|
| Q |
418 |
tgttcttttcccggattggaaagaaacctgctaacaactccaact |
462 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12934489 |
tgttcttttcccggattggaaagaaacctgctaacaactccaact |
12934445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 17124016 - 17123887
Alignment:
| Q |
27 |
atgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaa--aa |
124 |
Q |
| |
|
||||||||||| | ||||||||||||||| |||||| || ||||||||||| ||||||||| ||||||||| |||| ||||||||||||||||| || |
|
|
| T |
17124016 |
atgaattgcaaacattcacacttttctgctaagcaagataagcctagccatgcctctccaccttaagctatactatagttttcctatttgtagaaaataa |
17123917 |
T |
|
| Q |
125 |
tgcatccttgcattaaataggtagaagact |
154 |
Q |
| |
|
||| ||||||||||||||| ||||||||| |
|
|
| T |
17123916 |
tgcttccttgcattaaataaatagaagact |
17123887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 17121801 - 17121733
Alignment:
| Q |
88 |
cgtaagctatatcatagctttcctatttgtaga--aaaatgcatccttgcattaaataggtagaagact |
154 |
Q |
| |
|
|||||||||| |||| |||||||||||||||| ||||||| ||||||||||||||| ||||||||| |
|
|
| T |
17121801 |
cgtaagctatgccatatctttcctatttgtagaaaaaaatgcttccttgcattaaatacatagaagact |
17121733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 12930390 - 12930336
Alignment:
| Q |
160 |
caattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggcca |
216 |
Q |
| |
|
||||| ||||||| |||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
12930390 |
caattgcttgtagcaattgtctttggctgg--acataacccacacgtggtggggcca |
12930336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 12935136 - 12935082
Alignment:
| Q |
160 |
caattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggcca |
216 |
Q |
| |
|
||||| ||||||| |||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
12935136 |
caattgcttgtagcaattgtctttggctgg--acataacccacacgtggtggggcca |
12935082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 218 - 466
Target Start/End: Complemental strand, 14177959 - 14177711
Alignment:
| Q |
218 |
atttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcttgaagtagactttctaccatccaggtcacctgccatatccgc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14177959 |
atttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatatccgc |
14177860 |
T |
|
| Q |
318 |
atctgtgtagcctttcaaaatcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacagcttcccaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14177859 |
atctgtgtagcctttcaaaatcgaatttgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacagcttcccag |
14177760 |
T |
|
| Q |
418 |
tgttcttttcccggattggaaagaaacctgctaacaactccaactacat |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14177759 |
tgttcttttcccggattggaaagaaacctgctaacaactccaactacat |
14177711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 218 - 462
Target Start/End: Original strand, 28607914 - 28608159
Alignment:
| Q |
218 |
atttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcttgaagtagactttctaccatccaggtcacctgccatatccgc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28607914 |
atttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatatcagc |
28608013 |
T |
|
| Q |
318 |
atctgtgtagcctttcaaaatcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacagcttcccaa |
417 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608014 |
atctgtgtaggctttcaaaatcgaatttgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacagcttcccaa |
28608113 |
T |
|
| Q |
418 |
tgttc-ttttcccggattggaaagaaacctgctaacaactccaact |
462 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608114 |
tgttctttttcccggattggaaagaaacctgctaacaactccaact |
28608159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 28607332 - 28607521
Alignment:
| Q |
27 |
atgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaatg |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28607332 |
atgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctataccatagctttcctatttgtagaaaaatg |
28607431 |
T |
|
| Q |
127 |
catccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggcca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607432 |
catccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggcca |
28607521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 28612094 - 28612283
Alignment:
| Q |
27 |
atgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaatg |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28612094 |
atgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctataccatagctttcctatttgtagaaaaatg |
28612193 |
T |
|
| Q |
127 |
catccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggcca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28612194 |
catccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggcca |
28612283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 218 - 462
Target Start/End: Complemental strand, 15300475 - 15300231
Alignment:
| Q |
218 |
atttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcttgaagtagactttctaccatccaggtcacctgccatatccgc |
317 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15300475 |
atttttgcaatttagattgccaagatatagctcaccctgcaaaagcaaacacaattcctgaagcagactttctaccatccaggtcacctgccatatccgc |
15300376 |
T |
|
| Q |
318 |
atctgtgtagcctttcaaaatcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacagcttcccaa |
417 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15300375 |
atatgtgtagcctttcaaaatcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacaacttcccaa |
15300276 |
T |
|
| Q |
418 |
tgttcttttcccggattggaaagaaacctgctaacaactccaact |
462 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15300275 |
tgttcttttcccggattggaaagaaacctgctaacaactccaact |
15300231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 458
Target Start/End: Complemental strand, 6692801 - 6692728
Alignment:
| Q |
385 |
agatacctcaagatccacttcacagcttcccaatgttcttttcccggattggaaagaaacctgctaacaactcc |
458 |
Q |
| |
|
||||||||||| ||||| || || ||||||||||| |||| || ||||| || | |||||||||||||||||| |
|
|
| T |
6692801 |
agatacctcaaaatccatttaaccgcttcccaatgagctttacctggatttgacataaacctgctaacaactcc |
6692728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 27 - 216
Target Start/End: Complemental strand, 34906945 - 34906756
Alignment:
| Q |
27 |
atgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaatg |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34906945 |
atgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctataccatagctttcctatttgtagaaaaatt |
34906846 |
T |
|
| Q |
127 |
catccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggcca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34906845 |
catccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggcca |
34906756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 9e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 27 - 216
Target Start/End: Complemental strand, 8539024 - 8538835
Alignment:
| Q |
27 |
atgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaatg |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8539024 |
atgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccttaagctataccatagctttcctatttgtagaaaaatg |
8538925 |
T |
|
| Q |
127 |
catccttgcattaaataggtagaagactatttacaa-ttacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggcca |
216 |
Q |
| |
|
|||| ||||||||||| ||||||||||| ||| || ||| || |||||||||||||||||||| |||| |||||||| |||||||||||| |
|
|
| T |
8538924 |
catcattgcattaaatgagtagaagactagttataatttatttatagtaattgtctttggctgg-aacagtacccacatgtggtggggcca |
8538835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 71 - 216
Target Start/End: Complemental strand, 2308905 - 2308760
Alignment:
| Q |
71 |
tagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaattacttgt |
170 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2308905 |
tagccatgtctctccaccgtaagctataccatagttttcctatttatagaaaaatacatccttgcattaaataggtagaagactatttacaattacttgt |
2308806 |
T |
|
| Q |
171 |
agtaattgtctttggctggaaacaatacccacacgtggtggggcca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2308805 |
agtaattgtctttggctggaaacaatacccacacgtggtggggcca |
2308760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 458
Target Start/End: Original strand, 796020 - 796093
Alignment:
| Q |
385 |
agatacctcaagatccacttcacagcttcccaatgttcttttcccggattggaaagaaacctgctaacaactcc |
458 |
Q |
| |
|
||||||||||| ||||| || || ||||||||||| |||| || ||||| || | |||||||||||||||||| |
|
|
| T |
796020 |
agatacctcaaaatccatttaaccgcttcccaatgagctttacctggatttgacataaacctgctaacaactcc |
796093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 458
Target Start/End: Complemental strand, 8273768 - 8273695
Alignment:
| Q |
385 |
agatacctcaagatccacttcacagcttcccaatgttcttttcccggattggaaagaaacctgctaacaactcc |
458 |
Q |
| |
|
||||||||||| ||||| || || ||||||||||| |||| || ||||| || | |||||||||||||||||| |
|
|
| T |
8273768 |
agatacctcaaaatccatttaaccgcttcccaatgagctttacctggatttgacataaacctgctaacaactcc |
8273695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 51298598 - 51298526
Alignment:
| Q |
144 |
ggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggcca |
216 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||| |||||| ||||||||| |||||||||||||||||| |
|
|
| T |
51298598 |
ggtagaaaactatttgcaattacttgtagtaattgtttttggccagaaacaatagccacacgtggtggggcca |
51298526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 458
Target Start/End: Complemental strand, 19944751 - 19944678
Alignment:
| Q |
385 |
agatacctcaagatccacttcacagcttcccaatgttcttttcccggattggaaagaaacctgctaacaactcc |
458 |
Q |
| |
|
||||||||||| ||||| || || ||||||||||| |||| || ||||| || | |||||||||||||||||| |
|
|
| T |
19944751 |
agatacctcaaaatccatttaaccgcttcccaatgagctttacctggatttgacataaacctgctaacaactcc |
19944678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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