View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_low_29 (Length: 462)
Name: NF0942_low_29
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 2970197 - 2969776
Alignment:
| Q |
1 |
acctggggctatttggcaccagaatatgcagaatatggcaaggtgtcaagtagaacagatgtatattcttttggagtggtcctattacagcttatcactg |
100 |
Q |
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| T |
2970197 |
acctggggttatttggcaccagaatatgcagaatatggcaaggtgtcaagtagaacagatgtatattcttttggagtggtcctattacagcttattactg |
2970098 |
T |
|
| Q |
101 |
gaatgagaactacagacaaaagacttggaggaagaagccttgttggatgggtaacaaacaatcttaataccatatgaaaattttaatttacctgtaaact |
200 |
Q |
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| T |
2970097 |
gaatgagaactacagacaaaagacttggaggaagaagccttgttggatgggtaacaaacaatcttaataccatatgaaaattttaatttacctgtaaact |
2969998 |
T |
|
| Q |
201 |
gaaggtgtgtccagtgtttgacacgtgttggacatcaacgcatattaccggtgtccacgtatcaaaacaacaaatttctaagtgcaacattattcttact |
300 |
Q |
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| T |
2969997 |
gaaggtgtgtctagtgtttgacacgtgttggacatcaacgcatattaccggtgtccacgtatcaaaataacaaatttctaagtgcaacattattcttact |
2969898 |
T |
|
| Q |
301 |
ttgtatatttaannnnnnnnnnngcaggcaaggcctcttttaagagagagaaattatccagatctaattgatgaaaggatcattgatactcatgattacc |
400 |
Q |
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| T |
2969897 |
ttgtatatttaa---ttttttttgcaggcaaggcctcttttaagagagagaaattatccagatctaattgatgaaaggatcattgatactcatgattacc |
2969801 |
T |
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| Q |
401 |
atcaattattttggatgataagact |
425 |
Q |
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| T |
2969800 |
atcaattattttggatgataagact |
2969776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 2925491 - 2925368
Alignment:
| Q |
10 |
tatttggcaccagaatatgcagaatatggcaaggtgtcaagtagaacagatgtatattcttttggagtggtcctattacagcttatcactggaatgagaa |
109 |
Q |
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| T |
2925491 |
tattgggccccagaatatgcagcatatggtaaagtatcaaataaaacagatgtatattcttttggagtggttcttgttgagctaataaccggaatgagga |
2925392 |
T |
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| Q |
110 |
ctacagacaaaagacttggaggaa |
133 |
Q |
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|||| ||||||||||||||||||| |
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| T |
2925391 |
ctactgacaaaagacttggaggaa |
2925368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 16330632 - 16330775
Alignment:
| Q |
14 |
tggcaccagaatatgcagaatatggcaaggtgtcaagtagaacagatgtatattcttttggagtggtcctattacagcttatcactggaatgagaactac |
113 |
Q |
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| T |
16330632 |
tggcaccagaatatgcagaatctggtaaagtgtcaaccaagtcagatgtgtattcctttggagtagtgcttcttcagttaataacaggaatgaggaccac |
16330731 |
T |
|
| Q |
114 |
agacaaaagacttggaggaagaagccttgttggatgggtaacaa |
157 |
Q |
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| T |
16330732 |
agacaaaagaattggacacaaaagtcttgtgggatgggtaacaa |
16330775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 419
Target Start/End: Original strand, 16331191 - 16331255
Alignment:
| Q |
355 |
tatccagatctaattgatgaaaggatcattgatactcatgattaccatcaattattttggatgat |
419 |
Q |
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| T |
16331191 |
tatccagatctaattgatgaaaggatgatggatacctatgattgtcatcagcttttttggatgat |
16331255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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