View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0942_low_3 (Length: 760)

Name: NF0942_low_3
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0942_low_3
NF0942_low_3
[»] chr4 (12 HSPs)
chr4 (264-450)||(4089801-4089993)
chr4 (153-216)||(44362664-44362727)
chr4 (154-209)||(37496703-37496758)
chr4 (161-206)||(13307883-13307928)
chr4 (150-207)||(18513248-18513305)
chr4 (466-510)||(4089677-4089721)
chr4 (148-199)||(34589721-34589772)
chr4 (155-209)||(13117429-13117483)
chr4 (155-209)||(14465299-14465353)
chr4 (154-196)||(28663491-28663533)
chr4 (173-207)||(45615422-45615456)
chr4 (171-208)||(683068-683105)
[»] scaffold0314 (1 HSPs)
scaffold0314 (160-214)||(8953-9007)
[»] chr6 (8 HSPs)
chr6 (154-206)||(10031569-10031621)
chr6 (154-209)||(19369816-19369871)
chr6 (160-209)||(6751887-6751936)
chr6 (171-209)||(10158000-10158038)
chr6 (155-208)||(5579654-5579707)
chr6 (659-705)||(882743-882789)
chr6 (148-201)||(1334654-1334707)
chr6 (160-197)||(29959180-29959217)
[»] chr1 (4 HSPs)
chr1 (155-209)||(14332409-14332462)
chr1 (156-207)||(40176604-40176655)
chr1 (661-704)||(1514401-1514444)
chr1 (673-707)||(27500340-27500374)
[»] chr2 (8 HSPs)
chr2 (156-209)||(43586010-43586063)
chr2 (155-207)||(18512149-18512201)
chr2 (154-209)||(45000851-45000905)
chr2 (159-208)||(13501084-13501133)
chr2 (148-205)||(39399905-39399962)
chr2 (156-207)||(18570973-18571024)
chr2 (158-209)||(33884054-33884105)
chr2 (156-209)||(14373432-14373485)
[»] chr7 (11 HSPs)
chr7 (156-207)||(5937428-5937479)
chr7 (154-209)||(38134411-38134466)
chr7 (155-209)||(1885573-1885627)
chr7 (148-206)||(35238192-35238250)
chr7 (162-207)||(2144546-2144591)
chr7 (161-206)||(48964070-48964115)
chr7 (165-205)||(2143862-2143902)
chr7 (150-209)||(25956442-25956499)
chr7 (171-206)||(44172898-44172933)
chr7 (156-209)||(22801746-22801799)
chr7 (161-206)||(28635178-28635223)
[»] chr8 (8 HSPs)
chr8 (155-209)||(24295142-24295196)
chr8 (156-206)||(27733848-27733898)
chr8 (155-208)||(26915246-26915299)
chr8 (155-207)||(42874522-42874574)
chr8 (165-208)||(31119097-31119140)
chr8 (155-214)||(31548293-31548352)
chr8 (661-724)||(16972048-16972113)
chr8 (155-208)||(34073984-34074037)
[»] chr5 (7 HSPs)
chr5 (155-201)||(30080514-30080560)
chr5 (157-207)||(38784808-38784858)
chr5 (171-208)||(10009842-10009879)
chr5 (162-209)||(10010561-10010608)
chr5 (154-216)||(19167574-19167637)
chr5 (158-208)||(26205766-26205816)
chr5 (352-441)||(42594443-42594532)
[»] chr3 (5 HSPs)
chr3 (155-209)||(49179720-49179774)
chr3 (160-216)||(14338481-14338537)
chr3 (659-707)||(38332536-38332584)
chr3 (171-221)||(20691335-20691385)
chr3 (171-209)||(44427857-44427895)
[»] scaffold0024 (1 HSPs)
scaffold0024 (155-198)||(18124-18167)


Alignment Details
Target: chr4 (Bit Score: 76; Significance: 1e-34; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 264 - 450
Target Start/End: Complemental strand, 4089993 - 4089801
Alignment:
Q  264 acacttaataaaccaagaaagcatttatat----gattaaacatccat----gatattgaagagaattat-acctgtgatgatgagtgatgaatttgttg 354  Q
    ||||||||||||||||||||||||||||||    ||| ||||||||||    |||||| ||||||||||| |||| || ||||||||||||||||||       
T  4089993 acacttaataaaccaagaaagcatttatatatttgatcaaacatccatcgatgatattaaagagaattattacctctgctgatgagtgatgaatttg--- 4089897  T
Q  355 accacgaagaacttcacaaacaccgtcaaccccaccaaactcgagaagagatttcaagtccttttccttcacaattcctgcaatatcgttcctaac 450  Q
    |||||| ||||| |||||||| |   |||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| ||| ||||    
T  4089896 accacggagaacatcacaaactctaccaaccccaccaaactcaagaagagacttcaagtccttctccttcacaattccagcaatatcattcgtaac 4089801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 44362664 - 44362727
Alignment:
Q  153 ctgacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcggcgtcaga 216  Q
    ||||||||||||||||| |||||||||||||||||| || ||||||||| |||| || ||||||    
T  44362664 ctgacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcaga 44362727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 37496703 - 37496758
Alignment:
Q  154 tgacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 209  Q
    ||||||||||||  || ||||||||||||||||||||| ||||||||| |||||||    
T  37496703 tgacaccgataattttttgagaaaatgacataattcaatgtaatcacaagtgtcgg 37496758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 13307883 - 13307928
Alignment:
Q  161 gataaaattgtgagaaaatgacataattcaacgtaatcacatgtgt 206  Q
    ||||||||| ||||||||||||||||||||| ||||||||| ||||    
T  13307883 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 13307928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 18513305 - 18513248
Alignment:
Q  150 acactgacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtc 207  Q
    |||| ||||||||||| | | ||||||||||||||||||||| ||||||| |||||||    
T  18513305 acacagacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtc 18513248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 466 - 510
Target Start/End: Complemental strand, 4089721 - 4089677
Alignment:
Q  466 tgaagccatttcttgttgtacacgctactgctagtagtagtgagt 510  Q
    |||||||||||||||||| |||||||||  |||||||||||||||    
T  4089721 tgaagccatttcttgttgcacacgctacctctagtagtagtgagt 4089677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 199
Target Start/End: Complemental strand, 34589772 - 34589721
Alignment:
Q  148 acacactgacaccgataaaattgtgagaaaatgacataattcaacgtaatca 199  Q
    ||||| |||||||||||| | | ||||||||||||||||||||| |||||||    
T  34589772 acacattgacaccgataacaatttgagaaaatgacataattcaatgtaatca 34589721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 13117429 - 13117483
Alignment:
Q  155 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 209  Q
    |||||| ||||||||  |||||||||||| ||||||| ||||||||| |||||||    
T  13117429 gacaccaataaaatttggagaaaatgacaaaattcaatgtaatcacaagtgtcgg 13117483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 14465353 - 14465299
Alignment:
Q  155 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 209  Q
    ||||||||||| | | |||||||||||||||||||||  |||||| |||||||||    
T  14465353 gacaccgataataatttgagaaaatgacataattcaatttaatcatatgtgtcgg 14465299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 28663491 - 28663533
Alignment:
Q  154 tgacaccgataaaattgtgagaaaatgacataattcaacgtaa 196  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||    
T  28663491 tgacacggataaaattttgagaaaatgacataattcaatgtaa 28663533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 45615456 - 45615422
Alignment:
Q  173 agaaaatgacataattcaacgtaatcacatgtgtc 207  Q
    |||||||||||||||| ||||||||||||||||||    
T  45615456 agaaaatgacataattgaacgtaatcacatgtgtc 45615422  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 683068 - 683105
Alignment:
Q  171 tgagaaaatgacataattcaacgtaatcacatgtgtcg 208  Q
    |||||||||||||||||| || ||||||||||||||||    
T  683068 tgagaaaatgacataattgaatgtaatcacatgtgtcg 683105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 8953 - 9007
Alignment:
Q  160 cgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcggcgtca 214  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||    
T  8953 cgataaaattttgagaaaatgacataattcaacgtaatcacaagtgtcggtgtca 9007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 10031569 - 10031621
Alignment:
Q  154 tgacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgt 206  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||| ||||    
T  10031569 tgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 10031621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 19369816 - 19369871
Alignment:
Q  154 tgacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 209  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||||||| |||||||    
T  19369816 tgacacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcgg 19369871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 6751936 - 6751887
Alignment:
Q  160 cgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 209  Q
    |||||||||| ||||||||||||||||||||| ||||||||| |||||||    
T  6751936 cgataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcgg 6751887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 209
Target Start/End: Original strand, 10158000 - 10158038
Alignment:
Q  171 tgagaaaatgacataattcaacgtaatcacatgtgtcgg 209  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  10158000 tgagaaaatgacataattcaatgtaatcacatgtgtcgg 10158038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 5579654 - 5579707
Alignment:
Q  155 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcg 208  Q
    ||||||||||||||| ||||||||||||||| ||||| ||| ||||| ||||||    
T  5579654 gacaccgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtcg 5579707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 659 - 705
Target Start/End: Complemental strand, 882789 - 882743
Alignment:
Q  659 tatgtttgaataccttcatgcaaaaatgagttgaacaataaatttga 705  Q
    |||||||| |||| ||||||||||| |||||| ||||||||||||||    
T  882789 tatgtttggatacattcatgcaaaagtgagttaaacaataaatttga 882743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 1334654 - 1334707
Alignment:
Q  148 acacactgacaccgataaaattgtgagaaaatgacataattcaacgtaatcaca 201  Q
    ||||| |||||| ||||||||| ||| |||| |||||||||||| |||||||||    
T  1334654 acacattgacacggataaaattttgaaaaaaggacataattcaatgtaatcaca 1334707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 29959180 - 29959217
Alignment:
Q  160 cgataaaattgtgagaaaatgacataattcaacgtaat 197  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  29959180 cgataaaattttgagaaaatgacataattcaatgtaat 29959217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 14332409 - 14332462
Alignment:
Q  155 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 209  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||    
T  14332409 gacaccgataaaatt-tgagaaaatgacataattcaatgtaatcacatatgtcgg 14332462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 40176604 - 40176655
Alignment:
Q  156 acaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtc 207  Q
    |||||||||||||| |||||||||||| | |||||| |||||||||||||||    
T  40176604 acaccgataaaattttgagaaaatgacttcattcaatgtaatcacatgtgtc 40176655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 661 - 704
Target Start/End: Complemental strand, 1514444 - 1514401
Alignment:
Q  661 tgtttgaataccttcatgcaaaaatgagttgaacaataaatttg 704  Q
    |||||| |||| |||||| |||||||||||||||||||||||||    
T  1514444 tgtttggatacattcatgtaaaaatgagttgaacaataaatttg 1514401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 673 - 707
Target Start/End: Complemental strand, 27500374 - 27500340
Alignment:
Q  673 ttcatgcaaaaatgagttgaacaataaatttgagt 707  Q
    |||||| ||||||||||||||||||||||||||||    
T  27500374 ttcatgtaaaaatgagttgaacaataaatttgagt 27500340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 43586063 - 43586010
Alignment:
Q  156 acaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 209  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||| |||||||    
T  43586063 acacagataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcgg 43586010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 18512201 - 18512149
Alignment:
Q  155 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtc 207  Q
    ||||||||||||||| ||||||||| | ||||||||| |||||||||||||||    
T  18512201 gacaccgataaaattttgagaaaataatataattcaatgtaatcacatgtgtc 18512149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 45000905 - 45000851
Alignment:
Q  154 tgacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 209  Q
    |||||||||||||||| ||||||||||||| ||||||| ||||||| |||||||||    
T  45000905 tgacaccgataaaatt-tgagaaaatgacacaattcaatgtaatcatatgtgtcgg 45000851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 13501133 - 13501084
Alignment:
Q  159 ccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcg 208  Q
    ||||||||||| | ||||||||||||||||||| ||||||||| ||||||    
T  13501133 ccgataaaattttaagaaaatgacataattcaatgtaatcacaagtgtcg 13501084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 39399905 - 39399962
Alignment:
Q  148 acacactgacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtg 205  Q
    ||||| |||||||||| ||||| | |||||||||||||||||||| || |||||||||    
T  39399905 acacattgacaccgatgaaatttttagaaaatgacataattcaacctattcacatgtg 39399962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 18570973 - 18571024
Alignment:
Q  156 acaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtc 207  Q
    |||||||||| | | ||||||||||||||||||||| ||||||| |||||||    
T  18570973 acaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtc 18571024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 209
Target Start/End: Original strand, 33884054 - 33884105
Alignment:
Q  158 accgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 209  Q
    ||||||||||||||||||||||||||| |||||  ||||| ||| |||||||    
T  33884054 accgataaaattgtgagaaaatgacatgattcagtgtaattacaagtgtcgg 33884105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 14373485 - 14373432
Alignment:
Q  156 acaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 209  Q
    ||||| |||||||| |||   ||||||||||||||| |||||||||||||||||    
T  14373485 acaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcgg 14373432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 5937479 - 5937428
Alignment:
Q  156 acaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtc 207  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||| |||||    
T  5937479 acacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgtc 5937428  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 38134466 - 38134411
Alignment:
Q  154 tgacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 209  Q
    |||||||||||| | | ||||||||||||||||||||| ||||||| |||||||||    
T  38134466 tgacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcgg 38134411  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 1885573 - 1885627
Alignment:
Q  155 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 209  Q
    ||||| ||||||||| ||| ||||||||||||||||| ||||||||| |||||||    
T  1885573 gacacggataaaattttgaaaaaatgacataattcaatgtaatcacaagtgtcgg 1885627  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 35238250 - 35238192
Alignment:
Q  148 acacactgacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgt 206  Q
    ||||| |||||||||||| ||| |||||||||||||||||||||  |||||||| ||||    
T  35238250 acacattgacaccgataatattttgagaaaatgacataattcaatataatcacacgtgt 35238192  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 2144591 - 2144546
Alignment:
Q  162 ataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtc 207  Q
    |||||||| ||||||||||||||||||||| ||||||||| |||||    
T  2144591 ataaaattttgagaaaatgacataattcaatgtaatcacacgtgtc 2144546  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 48964115 - 48964070
Alignment:
Q  161 gataaaattgtgagaaaatgacataattcaacgtaatcacatgtgt 206  Q
    |||||||||||||||||||||||||||||||  |||||||| ||||    
T  48964115 gataaaattgtgagaaaatgacataattcaatttaatcacaagtgt 48964070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 2143902 - 2143862
Alignment:
Q  165 aaattgtgagaaaatgacataattcaacgtaatcacatgtg 205  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  2143902 aaattttgagaaaatgacataattcaatgtaatcacatgtg 2143862  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 25956442 - 25956499
Alignment:
Q  150 acactgacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 209  Q
    ||||||||||  ||||||||||||  |||||||||||||||| ||||||||| |||||||    
T  25956442 acactgacacaaataaaattgtga--aaatgacataattcaatgtaatcacaagtgtcgg 25956499  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 206
Target Start/End: Complemental strand, 44172933 - 44172898
Alignment:
Q  171 tgagaaaatgacataattcaacgtaatcacatgtgt 206  Q
    ||||||||||||||||||||| ||||||||||||||    
T  44172933 tgagaaaatgacataattcaatgtaatcacatgtgt 44172898  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 22801799 - 22801746
Alignment:
Q  156 acaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 209  Q
    |||||||| ||||| ||||| ||||||||||||||  ||||||||| |||||||    
T  22801799 acaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcgg 22801746  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 28635223 - 28635178
Alignment:
Q  161 gataaaattgtgagaaaatgacataattcaacgtaatcacatgtgt 206  Q
    ||||||||| |||||||||  || ||||||||||||||||||||||    
T  28635223 gataaaattttgagaaaatttcacaattcaacgtaatcacatgtgt 28635178  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 24295196 - 24295142
Alignment:
Q  155 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 209  Q
    |||| |||||||||||||||||||||||| |||| || ||||||||| |||||||    
T  24295196 gacatcgataaaattgtgagaaaatgacacaatttaatgtaatcacaagtgtcgg 24295142  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 27733848 - 27733898
Alignment:
Q  156 acaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgt 206  Q
    |||||||||||||| ||||||||||| ||||||||| ||||||||| ||||    
T  27733848 acaccgataaaattttgagaaaatgatataattcaatgtaatcacaagtgt 27733898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 26915299 - 26915246
Alignment:
Q  155 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcg 208  Q
    ||||| ||||||||| |||||||||||||||||| || ||||||||| ||||||    
T  26915299 gacacggataaaattttgagaaaatgacataatttaatgtaatcacaagtgtcg 26915246  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 42874522 - 42874574
Alignment:
Q  155 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtc 207  Q
    ||||||| ||| ||| ||||||||||||||||||||| ||||||||| |||||    
T  42874522 gacaccgttaacattttgagaaaatgacataattcaatgtaatcacaagtgtc 42874574  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 31119097 - 31119140
Alignment:
Q  165 aaattgtgagaaaatgacataattcaacgtaatcacatgtgtcg 208  Q
    ||||| ||||||||||||||||||||| ||||||||| ||||||    
T  31119097 aaattttgagaaaatgacataattcaatgtaatcacaagtgtcg 31119140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 31548352 - 31548293
Alignment:
Q  155 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcggcgtca 214  Q
    |||||||||||   | ||| ||||||||||||||||| ||||||||||||||||| ||||    
T  31548352 gacaccgataattatttgataaaatgacataattcaatgtaatcacatgtgtcggtgtca 31548293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 661 - 724
Target Start/End: Original strand, 16972048 - 16972113
Alignment:
Q  661 tgtttgaataccttcatgcaaaaatgagttgaacaataaatttgag--taagaatcaattctaaaa 724  Q
    ||||||||||| |||||| |||| ||| |||||||||||||||| |  ||| ||||||||||||||    
T  16972048 tgtttgaatacattcatgtaaaagtgatttgaacaataaatttgtgtttaaaaatcaattctaaaa 16972113  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 34074037 - 34073984
Alignment:
Q  155 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcg 208  Q
    ||||||||||||||| ||| |||||||||||||| || ||||||| | ||||||    
T  34074037 gacaccgataaaattttgaaaaaatgacataatttaatgtaatcataagtgtcg 34073984  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 30080560 - 30080514
Alignment:
Q  155 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcaca 201  Q
    ||||| ||||||||| ||||||||||||||||||||| |||||||||    
T  30080560 gacactgataaaattttgagaaaatgacataattcaatgtaatcaca 30080514  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 38784808 - 38784858
Alignment:
Q  157 caccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtc 207  Q
    ||||||||||||||||| ||||||| ||||||||| ||||||||| |||||    
T  38784808 caccgataaaattgtgaaaaaatgatataattcaatgtaatcacaagtgtc 38784858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 10009842 - 10009879
Alignment:
Q  171 tgagaaaatgacataattcaacgtaatcacatgtgtcg 208  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  10009842 tgagaaaatgacataattcaatgtaatcacatgtgtcg 10009879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 209
Target Start/End: Original strand, 10010561 - 10010608
Alignment:
Q  162 ataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 209  Q
    |||||||| ||| ||||||||||||||||  |||||||||||||||||    
T  10010561 ataaaattttgaaaaaatgacataattcattgtaatcacatgtgtcgg 10010608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 19167637 - 19167574
Alignment:
Q  154 tgacaccgataaaattgtg-agaaaatgacataattcaacgtaatcacatgtgtcggcgtcaga 216  Q
    |||||||||||||||| || | ||||||||| ||||||| ||||||||| ||||||| ||||||    
T  19167637 tgacaccgataaaattttgaaaaaaatgacacaattcaatgtaatcacaagtgtcggtgtcaga 19167574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 26205816 - 26205766
Alignment:
Q  158 accgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcg 208  Q
    |||||||||||| ||||||||||||||||||||  ||||||| | ||||||    
T  26205816 accgataaaattttgagaaaatgacataattcagtgtaatcataggtgtcg 26205766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 352 - 441
Target Start/End: Original strand, 42594443 - 42594532
Alignment:
Q  352 ttgaccacgaagaacttcacaaacaccgtcaaccccaccaaactcgagaagagatttcaagtccttttccttcacaattcctgcaatatc 441  Q
    ||||||| ||||||  ||||||||   | ||| |||||||| ||| |||||||||||||||||||| |  ||||||||| | ||||||||    
T  42594443 ttgaccatgaagaaaatcacaaactatgccaatcccaccaagctcaagaagagatttcaagtccttctttttcacaatttcagcaatatc 42594532  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 49179774 - 49179720
Alignment:
Q  155 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 209  Q
    ||||||||||||||| ||||||| ||||||||||| | ||||||||| |||||||    
T  49179774 gacaccgataaaattttgagaaagtgacataattcgatgtaatcacaagtgtcgg 49179720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 14338537 - 14338481
Alignment:
Q  160 cgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcggcgtcaga 216  Q
    |||||||||| ||| ||||||||||||||||| |||||||||  |||||| ||||||    
T  14338537 cgataaaattttgaaaaaatgacataattcaatgtaatcacaaatgtcggtgtcaga 14338481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 659 - 707
Target Start/End: Original strand, 38332536 - 38332584
Alignment:
Q  659 tatgtttgaataccttcatgcaaaaatgagttgaacaataaatttgagt 707  Q
    |||||||| |||| |||||| | ||||||||||||||||||||||||||    
T  38332536 tatgtttgtatacattcatggataaatgagttgaacaataaatttgagt 38332584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 20691335 - 20691385
Alignment:
Q  171 tgagaaaatgacataattcaacgtaatcacatgtgtcggcgtcagagacac 221  Q
    ||||||||||||||||||||  ||||||| ||||||||| |||||| ||||    
T  20691335 tgagaaaatgacataattcagtgtaatcatatgtgtcggtgtcagacacac 20691385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 209
Target Start/End: Original strand, 44427857 - 44427895
Alignment:
Q  171 tgagaaaatgacataattcaacgtaatcacatgtgtcgg 209  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  44427857 tgagaaaatgacataatccaatgtaatcacatgtgtcgg 44427895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 18167 - 18124
Alignment:
Q  155 gacaccgataaaattgtgagaaaatgacataattcaacgtaatc 198  Q
    ||||||||||||||| ||||||||| ||||||||||| ||||||    
T  18167 gacaccgataaaattttgagaaaataacataattcaatgtaatc 18124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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