View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_low_30 (Length: 461)
Name: NF0942_low_30
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 30 - 443
Target Start/End: Complemental strand, 4339218 - 4338804
Alignment:
| Q |
30 |
ttaatattatccaaccaatgcaaggatggttgtagtttggttctagagtatctaaacgagnnnnnnnnn--tattggagctgtaaggtatactgtataca |
127 |
Q |
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| T |
4339218 |
ttaatattatccaacaaacgcaaggatggttgtagtttggttctagagtatctaaacgagaaaaaaaaaaatattggagctgtaaggtatactgtataca |
4339119 |
T |
|
| Q |
128 |
ccattgaagggtatatgagaatttgaacctaattgttttactcttaaacaaagtaatttgttttttggaacaacaaagtaaacaaaaatttagtcaaata |
227 |
Q |
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| T |
4339118 |
ccattgaagggtatatgagaatttgaacctaattgttttactcttaaacaaagtaatttgttttt-ggaacaacaaattaaacaaaaatttagtcaaata |
4339020 |
T |
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| Q |
228 |
gtctggtggttaaattcacacgctttaagtgtggaaatagtttacgtaatcggctccttttaaaggatagggaaaaaa-ctttagtcatttttgttcttt |
326 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
4339019 |
gtctggtggttaaattcacacgctttaagtgtgtaaatagtttacgtaatcagctccttttaaaggatagaaaaaaaaactttagtcatttttgttcttt |
4338920 |
T |
|
| Q |
327 |
ttcatatatacttttgtgttattccttccaaaaattgtttcactcaaaaattaaactcgagttctttcaaacgattcattttttatggagcttattaacc |
426 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
4338919 |
ttcatatatacttttgtgttattcctcccaaaaattgtttcactcaaaaattaaactcgagttctttcaaacgattcattttttacggagcttatt-acc |
4338821 |
T |
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| Q |
427 |
acttgaagacaatcatt |
443 |
Q |
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| T |
4338820 |
acttgaagacaatcatt |
4338804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 411
Target Start/End: Original strand, 34653512 - 34653564
Alignment:
| Q |
359 |
aattgtttcactcaaaaattaaactcgagttctttcaaacgattcatttttta |
411 |
Q |
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| T |
34653512 |
aattgtttcaaccaaaaattaaactcgagttcttccaaacgattcatctttta |
34653564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 402
Target Start/End: Original strand, 4669484 - 4669532
Alignment:
| Q |
354 |
ccaaaaattgtttcactcaaaaattaaactcgagttctttcaaacgatt |
402 |
Q |
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| T |
4669484 |
ccaataattgttccactcaaaaattaaattcgagttctttcaaacgatt |
4669532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 405
Target Start/End: Original strand, 38648879 - 38648926
Alignment:
| Q |
358 |
aaattgtttcactcaaaaattaaactcgagttctttcaaacgattcat |
405 |
Q |
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| T |
38648879 |
aaattgtttcactcaaaaattaaaatcaaattctttcaaatgattcat |
38648926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 432
Target Start/End: Original strand, 3649491 - 3649553
Alignment:
| Q |
371 |
caaaaattaaactcgagttctttcaaacgattcatttttta-tggagcttattaaccacttga |
432 |
Q |
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||||| ||||||||| ||| ||||||||||||||||||| | | || |||||||||||||||| |
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| T |
3649491 |
caaaatttaaactcgcgttttttcaaacgattcatttttaattcgatcttattaaccacttga |
3649553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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