View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0942_low_33 (Length: 454)

Name: NF0942_low_33
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0942_low_33
NF0942_low_33
[»] chr8 (18 HSPs)
chr8 (30-454)||(26250666-26251089)
chr8 (294-379)||(26274999-26275081)
chr8 (30-101)||(11358268-11358339)
chr8 (174-249)||(26275285-26275360)
chr8 (30-101)||(36425805-36425876)
chr8 (30-95)||(12768826-12768891)
chr8 (30-81)||(15012484-15012535)
chr8 (30-91)||(31017470-31017531)
chr8 (30-90)||(16710743-16710803)
chr8 (30-101)||(7311425-7311496)
chr8 (30-101)||(8013395-8013466)
chr8 (30-101)||(36005557-36005628)
chr8 (30-101)||(36021874-36021945)
chr8 (30-101)||(36076043-36076114)
chr8 (30-101)||(41242191-41242262)
chr8 (30-101)||(6464651-6464722)
chr8 (41-79)||(1238312-1238350)
chr8 (30-75)||(45068491-45068536)
[»] chr1 (20 HSPs)
chr1 (30-101)||(31072394-31072465)
chr1 (30-101)||(9869181-9869252)
chr1 (30-101)||(27240205-27240276)
chr1 (30-95)||(44241439-44241504)
chr1 (30-101)||(39053413-39053484)
chr1 (30-101)||(39059785-39059856)
chr1 (30-79)||(32797821-32797870)
chr1 (30-95)||(44916420-44916485)
chr1 (30-101)||(11913337-11913408)
chr1 (30-91)||(1116060-1116121)
chr1 (30-91)||(1174692-1174753)
chr1 (30-95)||(5445039-5445104)
chr1 (30-95)||(29001813-29001878)
chr1 (30-101)||(6238731-6238802)
chr1 (30-101)||(42091972-42092043)
chr1 (30-101)||(45015857-45015928)
chr1 (30-79)||(4599627-4599676)
chr1 (44-95)||(23764521-23764572)
chr1 (30-79)||(26621568-26621617)
chr1 (30-79)||(41305589-41305638)
[»] chr3 (14 HSPs)
chr3 (30-101)||(10941379-10941450)
chr3 (30-95)||(43995159-43995224)
chr3 (41-101)||(43931658-43931718)
chr3 (30-101)||(24179150-24179221)
chr3 (30-101)||(6036342-6036413)
chr3 (30-101)||(27502042-27502113)
chr3 (30-95)||(20651200-20651265)
chr3 (30-101)||(32746446-32746517)
chr3 (30-91)||(41354145-41354206)
chr3 (30-101)||(9570623-9570694)
chr3 (30-101)||(9577125-9577196)
chr3 (36-101)||(25893307-25893377)
chr3 (30-95)||(4311561-4311626)
chr3 (30-79)||(13015084-13015133)
[»] chr5 (15 HSPs)
chr5 (30-95)||(2438883-2438948)
chr5 (30-101)||(2957935-2958006)
chr5 (30-101)||(2966404-2966475)
chr5 (30-101)||(25894724-25894795)
chr5 (36-101)||(4973639-4973704)
chr5 (30-95)||(12505840-12505905)
chr5 (30-95)||(22313912-22313977)
chr5 (30-95)||(22360046-22360111)
chr5 (30-79)||(42150917-42150966)
chr5 (30-101)||(34357363-34357434)
chr5 (30-101)||(34359154-34359225)
chr5 (30-101)||(40958692-40958763)
chr5 (30-100)||(29980536-29980606)
chr5 (30-100)||(30041319-30041389)
chr5 (30-95)||(5876300-5876365)
[»] chr6 (20 HSPs)
chr6 (30-101)||(29906966-29907037)
chr6 (31-101)||(30117344-30117414)
chr6 (30-101)||(31547971-31548042)
chr6 (36-101)||(9864841-9864906)
chr6 (30-95)||(13671892-13671957)
chr6 (30-101)||(4020310-4020381)
chr6 (30-101)||(4026736-4026807)
chr6 (30-101)||(4738398-4738469)
chr6 (30-101)||(7069777-7069848)
chr6 (30-101)||(34648876-34648947)
chr6 (30-101)||(34655327-34655398)
chr6 (30-101)||(1428498-1428569)
chr6 (30-95)||(27670176-27670241)
chr6 (40-95)||(1167572-1167627)
chr6 (30-101)||(11058225-11058296)
chr6 (30-101)||(34711632-34711703)
chr6 (30-79)||(21262649-21262698)
chr6 (41-101)||(32328579-32328639)
chr6 (30-101)||(4186761-4186832)
chr6 (50-101)||(7062578-7062629)
[»] scaffold0343 (1 HSPs)
scaffold0343 (30-95)||(2727-2792)
[»] chr7 (26 HSPs)
chr7 (30-95)||(37026130-37026195)
chr7 (30-101)||(6020939-6021010)
chr7 (30-101)||(48347171-48347242)
chr7 (30-95)||(1948708-1948773)
chr7 (30-95)||(39432989-39433054)
chr7 (30-101)||(8185467-8185538)
chr7 (30-101)||(8193027-8193098)
chr7 (30-101)||(48353555-48353626)
chr7 (30-88)||(33850718-33850776)
chr7 (30-79)||(45433684-45433733)
chr7 (30-101)||(3924168-3924239)
chr7 (30-101)||(21642594-21642665)
chr7 (30-101)||(23612465-23612536)
chr7 (30-101)||(2446722-2446793)
chr7 (30-101)||(5049987-5050058)
chr7 (30-101)||(5056382-5056453)
chr7 (30-101)||(6795514-6795585)
chr7 (30-101)||(36875621-36875692)
chr7 (30-100)||(1379024-1379094)
chr7 (30-100)||(8142521-8142591)
chr7 (30-79)||(9642991-9643040)
chr7 (30-95)||(15914720-15914785)
chr7 (30-79)||(19089906-19089955)
chr7 (30-95)||(26601994-26602059)
chr7 (44-95)||(15949241-15949292)
chr7 (37-101)||(14298976-14299040)
[»] chr4 (14 HSPs)
chr4 (30-95)||(16838434-16838499)
chr4 (40-101)||(30211621-30211682)
chr4 (30-101)||(8103958-8104029)
chr4 (30-101)||(37368389-37368460)
chr4 (30-101)||(55462847-55462918)
chr4 (30-95)||(16405424-16405489)
chr4 (30-101)||(17456931-17457002)
chr4 (30-101)||(27590381-27590452)
chr4 (30-95)||(5660624-5660689)
chr4 (30-101)||(30238336-30238407)
chr4 (40-95)||(36754876-36754931)
chr4 (30-101)||(41373063-41373134)
chr4 (30-79)||(7780505-7780554)
chr4 (30-79)||(13594206-13594255)
[»] scaffold0060 (1 HSPs)
scaffold0060 (30-101)||(15247-15318)
[»] chr2 (19 HSPs)
chr2 (30-101)||(21332069-21332140)
chr2 (30-101)||(21341957-21342028)
chr2 (30-101)||(15852626-15852697)
chr2 (30-101)||(29485003-29485074)
chr2 (30-101)||(45012059-45012130)
chr2 (30-101)||(12950872-12950943)
chr2 (30-101)||(36782259-36782330)
chr2 (30-101)||(42931447-42931518)
chr2 (30-95)||(45700719-45700784)
chr2 (30-101)||(34834887-34834958)
chr2 (30-101)||(34841331-34841402)
chr2 (30-101)||(43267935-43268006)
chr2 (30-100)||(2157689-2157759)
chr2 (30-100)||(2164105-2164175)
chr2 (30-100)||(13902032-13902102)
chr2 (30-79)||(2021523-2021572)
chr2 (47-95)||(11910044-11910092)
chr2 (30-95)||(16856562-16856627)
chr2 (30-95)||(16817405-16817470)
[»] scaffold0936 (1 HSPs)
scaffold0936 (29-95)||(3338-3404)
[»] scaffold0043 (1 HSPs)
scaffold0043 (30-101)||(5080-5151)
[»] scaffold0513 (1 HSPs)
scaffold0513 (30-79)||(12031-12080)
[»] scaffold0053 (1 HSPs)
scaffold0053 (30-95)||(49772-49837)


Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 30 - 454
Target Start/End: Original strand, 26250666 - 26251089
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaatttctcaccttcagtttaggtagtttctacc 129  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  26250666 attagattacgtgtgacgcttgattaaggaactctaatcctaacaaatttcacgccttattaatctcaatttctcaccttcagtttaggtagtttctacc 26250765  T
Q  130 acctgcacaaagaagcaatatagttgacctatgaaattctttgcacctggggtaagatttcatgttaggtagtttctaccacctgcaataccaactttct 229  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26250766 acctgcacaaagaagcaatatagatgacctatgatattctttgcaccaggggtaagatttcatgttaggtagtttctaccacctgcaataccaactttct 26250865  T
Q  230 cacctttcccatcttcagttcacatcctcaacaatttgtgagtcacaaataaccttaatcaataaaactcattctaaaaatacatgagatgtcaaaagaa 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26250866 cacctttcccatcttcagttcacatcctcaacaatttgtgagtcacaaataaccttaatcaataaaactcattctaaaaatacatgagatgtcaaaagaa 26250965  T
Q  330 ataattgagttccttagagcttaaggtggaatttatgatattgtaatttttactaccagtataaaactagtttgaaataatagctacaatgtaacttata 429  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  26250966 ataactgagttccttagagcttaaggtggaatttatgatattgtaatttttaccaccagtataaaact-gtttgaaataatagctacaatgtaacttata 26251064  T
Q  430 tgagcaggttgcttgtgaaacaata 454  Q
    ||||||| |||||||||||||||||    
T  26251065 tgagcagattgcttgtgaaacaata 26251089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 294 - 379
Target Start/End: Complemental strand, 26275081 - 26274999
Alignment:
Q  294 aaactcattctaaaaatacatgagatgtcaaaagaaataattgagttccttagagcttaaggtggaatttatgatattgtaatttt 379  Q
    |||||||||||||||||| |||||||||||||||||||||||  ||||||||  |||||| ||||||||||||||| |||||||||    
T  26275081 aaactcattctaaaaatagatgagatgtcaaaagaaataatt--gttccttattgcttaatgtggaatttatgata-tgtaatttt 26274999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 11358268 - 11358339
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| |||||||||||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  11358268 attaggttacgtgtgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 11358339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 26275360 - 26275285
Alignment:
Q  174 acctggggtaagatttcatgttaggtagtttctaccacctgcaataccaactttctcacctttcccatcttcagtt 249  Q
    |||||| |||| ||||||||||||||||||| ||||| ||||||| |||   ||||||||||||||||||||||||    
T  26275360 acctggtgtaatatttcatgttaggtagtttttaccaactgcaatgccactgttctcacctttcccatcttcagtt 26275285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 36425805 - 36425876
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  36425805 attaggttacgtgcgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 36425876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 12768891 - 12768826
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    ||||| |||||||||| ||||||| || ||||||||||||| |||||||||| |||||||||||||    
T  12768891 attaggttacgtgtgaagcttgatcaaagaactctaatcctaacaagtttcacgccttattaatct 12768826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 15012535 - 15012484
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttca 81  Q
    ||||| || |||||||||||||||||||||||||||||||| ||||||||||    
T  15012535 attaggttccgtgtgacgcttgattaaggaactctaatcctaacaagtttca 15012484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 31017531 - 31017470
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttatta 91  Q
    ||||| |||| |||||||||||||||| ||||||||||||| || ||||||| |||||||||    
T  31017531 attaggttacatgtgacgcttgattaaagaactctaatcctaactagtttcacgccttatta 31017470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 16710743 - 16710803
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttatt 90  Q
    ||||| |||||||||||||| ||| |||||||||||||||| |||||||| ||||| ||||    
T  16710743 attaggttacgtgtgacgctcgatcaaggaactctaatcctaacaagttttatgccctatt 16710803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 7311496 - 7311425
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| |||||    
T  7311496 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaattt 7311425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 8013395 - 8013466
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| |||||    
T  8013395 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaattt 8013466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 36005557 - 36005628
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| |||||    
T  36005557 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaattt 36005628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 36021874 - 36021945
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| |||||    
T  36021874 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaattt 36021945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 36076114 - 36076043
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| |||||    
T  36076114 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaattt 36076043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 41242191 - 41242262
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| |||||    
T  41242191 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaattt 41242262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 6464651 - 6464722
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| || ||||| | ||| ||||||||| |||||    
T  6464651 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacgagttttacgccctattaatctcaattt 6464722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 1238350 - 1238312
Alignment:
Q  41 tgtgacgcttgattaaggaactctaatcctcacaagttt 79  Q
    ||||||||||||| |||||||||||||||| ||||||||    
T  1238350 tgtgacgcttgatcaaggaactctaatcctaacaagttt 1238312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 45068491 - 45068536
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaa 75  Q
    ||||| ||||||| ||||||||||||| ||||||||||||| ||||    
T  45068491 attaggttacgtgcgacgcttgattaaagaactctaatcctaacaa 45068536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 31072465 - 31072394
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  31072465 attaggttacgtgtgacgcttgattaaggaactctaatcctaacaagtttcatgccttattaatctcaattt 31072394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 9869252 - 9869181
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| |||||||||||||||||| |||||||||||||||| ||||||||||  |||||||||||| |||||    
T  9869252 attaggttacgtgtgacgcttgatcaaggaactctaatcctaacaagtttcacaccttattaatctcaattt 9869181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 27240205 - 27240276
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||||||| |||||||||||||||| |||||||||| ||||||||||||| |||||    
T  27240205 attaggttacgtgcgacgcttgatcaaggaactctaatcctaacaagtttcacgccttattaatctcaattt 27240276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 44241504 - 44241439
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    ||||| |||||||||||||||||| || ||||||||||||| |||||||||| |||||||||||||    
T  44241504 attaggttacgtgtgacgcttgatcaatgaactctaatcctaacaagtttcacgccttattaatct 44241439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 39053413 - 39053484
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  39053413 attaggttacgtgcgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 39053484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 39059785 - 39059856
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  39059785 attaggttacgtgcgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 39059856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 32797870 - 32797821
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagttt 79  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  32797870 attaggttacgtgtgacgcttgattaaggaactctaatcctaacaagttt 32797821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 44916485 - 44916420
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    ||||| |||||||||||| ||| |||||||| ||||||||| |||||||||| |||||||||||||    
T  44916485 attaggttacgtgtgacgtttggttaaggaattctaatcctaacaagtttcacgccttattaatct 44916420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 11913337 - 11913408
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| |||| ||||| ||||| | |||||||||||||||| |||||||||| ||||||||||||| |||||    
T  11913337 attaggttacatgtgatgcttggtcaaggaactctaatcctaacaagtttcacgccttattaatctcaattt 11913408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 1116060 - 1116121
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttatta 91  Q
    ||||| ||||||||||||||||||||||||||||||||| | | ||||||||  ||||||||    
T  1116060 attaggttacgtgtgacgcttgattaaggaactctaatcataagaagtttcacaccttatta 1116121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 1174753 - 1174692
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttatta 91  Q
    ||||| |||||||||||||||| | |||||||||||||||| |||||||||| ||| |||||    
T  1174753 attaggttacgtgtgacgcttgctcaaggaactctaatcctaacaagtttcacgccctatta 1174692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 5445039 - 5445104
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    ||||| ||| |||||| ||||||| |||||||||||||||| ||||||||||  ||||||||||||    
T  5445039 attaggttatgtgtgaggcttgatcaaggaactctaatcctaacaagtttcacaccttattaatct 5445104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 29001878 - 29001813
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    ||||| |||||||||||||| ||  |||||||||||||||| |||||||| | |||||||||||||    
T  29001878 attaggttacgtgtgacgctcgaccaaggaactctaatcctaacaagttttacgccttattaatct 29001813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 6238802 - 6238731
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| |||||    
T  6238802 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaattt 6238731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 42092043 - 42091972
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| |||||    
T  42092043 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaattt 42091972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 45015928 - 45015857
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| |||||    
T  45015928 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaattt 45015857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 4599676 - 4599627
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagttt 79  Q
    ||||| ||||||||||||||| || |||||||||||||||| ||||||||    
T  4599676 attaggttacgtgtgacgcttaatcaaggaactctaatcctaacaagttt 4599627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 95
Target Start/End: Original strand, 23764521 - 23764572
Alignment:
Q  44 gacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    |||||||||| |||||||||||||||| |||||||| | ||| |||||||||    
T  23764521 gacgcttgatcaaggaactctaatcctaacaagttttacgccctattaatct 23764572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 26621617 - 26621568
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagttt 79  Q
    ||||| ||||||||||||||| || ||||||| |||||||| ||||||||    
T  26621617 attaggttacgtgtgacgcttaatcaaggaaccctaatcctaacaagttt 26621568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 41305589 - 41305638
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagttt 79  Q
    ||||| ||| ||||||||||| || |||||||||||||||| ||||||||    
T  41305589 attaggttatgtgtgacgcttaatcaaggaactctaatcctaacaagttt 41305638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 10941379 - 10941450
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||    
T  10941379 attaggttacgtgtgacgcttgattaaggaactctaatcctaacaagtttcacgccttattaatctcaattt 10941450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 43995224 - 43995159
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    ||||| |||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||    
T  43995224 attaggttacgtgtgacgcttggttaaggaactctaatcctgacaagtttcacgccttattaatct 43995159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 43931718 - 43931658
Alignment:
Q  41 tgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||    
T  43931718 tgtgacgcttgattaaggaactctaatcctaacaagtttcacgccttattaatctcaattt 43931658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 24179221 - 24179150
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| |||||||||||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  24179221 attaggttacgtgtgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 24179150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 6036413 - 6036342
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||| |||||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  6036413 attaggttacgagtgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 6036342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 27502042 - 27502113
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  27502042 attaggttacgtgcgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 27502113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 20651200 - 20651265
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    |||| ||||||||||| ||||||| |||||||||||||||| || ||||||| |||||||||||||    
T  20651200 attaaattacgtgtgatgcttgatcaaggaactctaatcctaacgagtttcacgccttattaatct 20651265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 32746517 - 32746446
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||| |||||||||||||| |||||||||||||||| |||||||| | ||| ||||||||| |||||    
T  32746517 attaggttatgtgtgacgcttgatcaaggaactctaatcctaacaagttttacgccctattaatctcaattt 32746446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 41354145 - 41354206
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttatta 91  Q
    ||||| |||||||||||||||| | |||||||||||||||| |||||||||| ||| |||||    
T  41354145 attaggttacgtgtgacgcttgctcaaggaactctaatcctaacaagtttcacgccctatta 41354206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 9570623 - 9570694
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| |||||||||||||| ||| |||||| ||||||||| |||||||| | ||| ||||||||| |||||    
T  9570623 attaggttacgtgtgacgctcgatcaaggaattctaatcctaacaagttttacgccctattaatctcaattt 9570694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 9577125 - 9577196
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| |||||||||||||| ||| |||||| ||||||||| |||||||| | ||| ||||||||| |||||    
T  9577125 attaggttacgtgtgacgctcgatcaaggaattctaatcctaacaagttttacgccctattaatctcaattt 9577196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 25893377 - 25893307
Alignment:
Q  36 ttacgtgtgacgcttgattaaggaa-----ctctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    |||||||||||||||||| ||||||     |||||||||| |||||||||| ||| ||||||||| |||||    
T  25893377 ttacgtgtgacgcttgatcaaggaatttaactctaatcctaacaagtttcacgccctattaatctcaattt 25893307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 4311561 - 4311626
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    ||||| ||| ||| |||| ||||| |||||||||||||||| |||||||| | ||| |||||||||    
T  4311561 attaggttatgtgcgacgattgatcaaggaactctaatcctaacaagttttacgccctattaatct 4311626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 13015133 - 13015084
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagttt 79  Q
    ||||| ||| |||||||||||||| ||| |||||||||||| ||||||||    
T  13015133 attaggttatgtgtgacgcttgatcaagaaactctaatcctaacaagttt 13015084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 2438948 - 2438883
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  2438948 attaggttacgtgtgacgcttgattaaggaactctaatcctaacaagtttcacgccttattaatct 2438883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 2958006 - 2957935
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  2958006 attaggttacgtgcgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 2957935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 2966475 - 2966404
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  2966475 attaggttacgtgcgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 2966404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 25894724 - 25894795
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  25894724 attaggttacgtgcgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 25894795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 4973704 - 4973639
Alignment:
Q  36 ttacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    |||||||||||||||||| |||||||||| ||||| ||||||||||  |||||||||||| |||||    
T  4973704 ttacgtgtgacgcttgatcaaggaactctgatcctaacaagtttcaccccttattaatctcaattt 4973639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 12505840 - 12505905
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    ||||| ||||||| ||| |||||| |||||||||||||||| |||||||||| |||||||||||||    
T  12505840 attaggttacgtgggactcttgatcaaggaactctaatcctaacaagtttcacgccttattaatct 12505905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 22313977 - 22313912
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    ||||| |||||||||||||||||| |||||||||||||||| |||||||| | ||| |||||||||    
T  22313977 attaggttacgtgtgacgcttgatcaaggaactctaatcctaacaagttttacgccctattaatct 22313912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 22360111 - 22360046
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    ||||| |||||||||||||||||| |||||||||||||||| |||||||| | ||| |||||||||    
T  22360111 attaggttacgtgtgacgcttgatcaaggaactctaatcctaacaagttttacgccctattaatct 22360046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 42150966 - 42150917
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagttt 79  Q
    ||||| ||| ||||||||||||||||||||||||||||||| ||||||||    
T  42150966 attaggttatgtgtgacgcttgattaaggaactctaatcctaacaagttt 42150917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 34357363 - 34357434
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| |||||    
T  34357363 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaattt 34357434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 34359154 - 34359225
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| |||||    
T  34359154 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaattt 34359225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 40958692 - 40958763
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||| |||||||||||||| |||||||||||||||| |||||| | | ||| ||||||||| |||||    
T  40958692 attaggttatgtgtgacgcttgatcaaggaactctaatcctaacaagtgttacgccctattaatctcaattt 40958763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 29980606 - 29980536
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaatt 100  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| ||||    
T  29980606 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaatt 29980536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 30041319 - 30041389
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaatt 100  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| ||||    
T  30041319 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaatt 30041389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 5876365 - 5876300
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    ||||| ||| ||| |||||||||| |||||||||||||||| |||||||| | ||| |||||||||    
T  5876365 attaggttatgtgcgacgcttgatcaaggaactctaatcctaacaagttttacgccctattaatct 5876300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 29907037 - 29906966
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| |||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||| |||||    
T  29907037 attaggttacgtgtgacgcttgatcaaggaactctaatcctaacaagtttcacgccttattaatctcaattt 29906966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 30117344 - 30117414
Alignment:
Q  31 ttagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    |||| |||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||| |||||    
T  30117344 ttaggttacgtgtgacgcttgatcaaggaactctaatcctaacaagtttcacgccttattaatctcaattt 30117414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 31548042 - 31547971
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| |||||||||||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  31548042 attaggttacgtgtgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 31547971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 9864841 - 9864906
Alignment:
Q  36 ttacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    |||||||||||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  9864841 ttacgtgtgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 9864906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 13671892 - 13671957
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    ||||| |||||||||||||||||| |||||||||||||||| |||||||||| || ||||||||||    
T  13671892 attaggttacgtgtgacgcttgatcaaggaactctaatcctaacaagtttcacgcattattaatct 13671957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 4020310 - 4020381
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  4020310 attaggttacgtgcgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 4020381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 4026736 - 4026807
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  4026736 attaggttacgtgcgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 4026807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 4738398 - 4738469
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  4738398 attaggttacgtgcgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 4738469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 7069777 - 7069848
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  7069777 attaggttacgtgcgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 7069848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 34648947 - 34648876
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  34648947 attaggttacgtgcgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 34648876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 34655398 - 34655327
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  34655398 attaggttacgtgcgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 34655327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 1428498 - 1428569
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||| | ||||||||||||| |||||    
T  1428498 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttttacgccttattaatctcaattt 1428569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 27670241 - 27670176
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    ||||| ||||||||||| |||||| |||||||||||||||| ||||||||||  | ||||||||||    
T  27670241 attaggttacgtgtgacacttgatcaaggaactctaatcctaacaagtttcacactttattaatct 27670176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 1167572 - 1167627
Alignment:
Q  40 gtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    |||||||||||||| || ||| ||||||||| |||||||||| |||||||||||||    
T  1167572 gtgtgacgcttgatcaaagaattctaatcctaacaagtttcacgccttattaatct 1167627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 11058225 - 11058296
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| |||||    
T  11058225 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaattt 11058296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 34711632 - 34711703
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| |||||    
T  34711632 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaattt 34711703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 21262649 - 21262698
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagttt 79  Q
    ||||| ||||||||||||||| || |||||||||||||||| ||||||||    
T  21262649 attaggttacgtgtgacgcttaatcaaggaactctaatcctaacaagttt 21262698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 32328579 - 32328639
Alignment:
Q  41 tgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| |||||    
T  32328579 tgtgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaattt 32328639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 4186832 - 4186761
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||  | ||| ||||||||| |||||    
T  4186832 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttctacgccctattaatctcaattt 4186761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 7062578 - 7062629
Alignment:
Q  50 tgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    |||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  7062578 tgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 7062629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 2792 - 2727
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    ||||| |||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||    
T  2792 attaggttacgtgtgacgcttgatcaaggaactctaatcctaacaagtttcacgccttattaatct 2727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 37026195 - 37026130
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    ||||| |||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||    
T  37026195 attaggttacgtgtgacgcttgatcaaggaactctaatcctaacaagtttcacgccttattaatct 37026130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 6020939 - 6021010
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| |||||||||||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  6020939 attaggttacgtgtgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 6021010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 48347171 - 48347242
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||||||| |||||||||||||||| |||||||||||||| ||||||||| |||||    
T  48347171 attaggttacgtgcgacgcttgatcaaggaactctaatcctaacaagtttcatgccctattaatctcaattt 48347242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 1948708 - 1948773
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    ||||| ||| ||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||    
T  1948708 attaggttatgtgtgacgcttgattaaggaactctaatcctaacaagtttcacgccctattaatct 1948773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 39433054 - 39432989
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    ||||| |||||||||||||||||| |||||||||||||||| ||||||||||  ||||||||||||    
T  39433054 attaggttacgtgtgacgcttgatcaaggaactctaatcctaacaagtttcacaccttattaatct 39432989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 8185467 - 8185538
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  8185467 attaggttacgtgcgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 8185538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 8193027 - 8193098
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  8193027 attaggttacgtgcgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 8193098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 48353555 - 48353626
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  48353555 attaggttacgtgcgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 48353626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 33850718 - 33850776
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgcctta 88  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||| | ||||||    
T  33850718 attaggttacgtgtgacgcttgattaaggaactctaatcctaacaagtttaacgcctta 33850776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 45433733 - 45433684
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagttt 79  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  45433733 attaggttacgtgtgacgcttgattaaggaactctaatcctaacaagttt 45433684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 3924168 - 3924239
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| |||||||||||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| |||||    
T  3924168 attaggttacgtgtgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaattt 3924239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 21642665 - 21642594
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||| |||||| ||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  21642665 attaggttatgtgtgatgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 21642594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 23612536 - 23612465
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||| |||||||||||||| |||||||||||||||| |||||||| | ||| ||||||||| |||||    
T  23612536 attaggttatgtgtgacgcttgatcaaggaactctaatcctaacaagttttacgccctattaatctcaattt 23612465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 2446793 - 2446722
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| |||||    
T  2446793 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaattt 2446722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 5049987 - 5050058
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| |||||    
T  5049987 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaattt 5050058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 5056382 - 5056453
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| |||||    
T  5056382 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaattt 5056453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 6795585 - 6795514
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| |||||    
T  6795585 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaattt 6795514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 36875692 - 36875621
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| |||||||||||||| ||| ||||||||| |||||| |||||||| | ||| ||||||||| |||||    
T  36875692 attaggttacgtgtgacgctcgatcaaggaactccaatcctaacaagttttacgccctattaatctcaattt 36875621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 1379094 - 1379024
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaatt 100  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| ||||    
T  1379094 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaatt 1379024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 8142521 - 8142591
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaatt 100  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| ||||    
T  8142521 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaatt 8142591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 9642991 - 9643040
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagttt 79  Q
    ||||| |||||||||||||| ||| |||||||||||||||| ||||||||    
T  9642991 attaggttacgtgtgacgctcgatcaaggaactctaatcctaacaagttt 9643040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 15914785 - 15914720
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    ||||| ||| ||| |||||||||| |||||||||||||||| |||||||| | ||| |||||||||    
T  15914785 attaggttatgtgcgacgcttgatcaaggaactctaatcctaacaagttttacgccctattaatct 15914720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 19089955 - 19089906
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagttt 79  Q
    ||||| ||| |||||||||||||| |||||||||||||||| ||||||||    
T  19089955 attaggttatgtgtgacgcttgatcaaggaactctaatcctaacaagttt 19089906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 26602059 - 26601994
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    ||||| ||| |||||||||||||| |||||| ||||||||| |||||||| | ||| |||||||||    
T  26602059 attaggttatgtgtgacgcttgatcaaggaattctaatcctaacaagttttacgccctattaatct 26601994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 95
Target Start/End: Complemental strand, 15949292 - 15949241
Alignment:
Q  44 gacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    |||||||||| |||||||||||||||| |||||||| | ||| |||||||||    
T  15949292 gacgcttgatcaaggaactctaatcctaacaagttttacgccctattaatct 15949241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 14299040 - 14298976
Alignment:
Q  37 tacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    |||||| |||| | ||| |||||||||||||||| |||||||| | ||| ||||||||| |||||    
T  14299040 tacgtgcgacgttcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaattt 14298976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 16838434 - 16838499
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    ||||| |||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||    
T  16838434 attaggttacgtgtgacgcttgatcaaggaactctaatcctaacaagtttcacgccttattaatct 16838499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 30211621 - 30211682
Alignment:
Q  40 gtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||    
T  30211621 gtgtgacgcttgattaaggaactctaatcataacaagtttcatgccttattaatctcaattt 30211682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 8104029 - 8103958
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| |||||||||||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  8104029 attaggttacgtgtgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 8103958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 37368389 - 37368460
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| |||||||||||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  37368389 attaggttacgtgtgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 37368460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 55462847 - 55462918
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| |||||||||||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  55462847 attaggttacgtgtgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 55462918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 16405489 - 16405424
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    ||||| |||||||||||||||||| |||||||||||||||| |||||||| | |||||||||||||    
T  16405489 attaggttacgtgtgacgcttgatcaaggaactctaatcctaacaagttttacgccttattaatct 16405424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 17457002 - 17456931
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  17457002 attaggttacgtgcgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 17456931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 27590452 - 27590381
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  27590452 attaggttacgtgcgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 27590381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 5660624 - 5660689
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    ||||| |||| ||||| ||||||| |||||||||||||||| |||||||||| |||||||||||||    
T  5660624 attaggttacatgtgatgcttgatcaaggaactctaatcctaacaagtttcacgccttattaatct 5660689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 30238407 - 30238336
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||| |||||||||||||| |||||||||||||||| |||||||| | ||| ||||||||| |||||    
T  30238407 attaggttatgtgtgacgcttgatcaaggaactctaatcctaacaagttttacgccctattaatctcaattt 30238336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 36754876 - 36754931
Alignment:
Q  40 gtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    |||||||||||||||||||||||  |||||| | |||||||| |||||||||||||    
T  36754876 gtgtgacgcttgattaaggaacttcaatcctaataagtttcacgccttattaatct 36754931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 41373134 - 41373063
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| |||||    
T  41373134 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaattt 41373063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 7780554 - 7780505
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagttt 79  Q
    ||||| ||||||||||||||| || |||||||||||||||| ||||||||    
T  7780554 attaggttacgtgtgacgcttaatcaaggaactctaatcctaacaagttt 7780505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 13594255 - 13594206
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagttt 79  Q
    ||||| |||||||||||||| ||| |||||||||||||||| ||||||||    
T  13594255 attaggttacgtgtgacgctcgatcaaggaactctaatcctaacaagttt 13594206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 15318 - 15247
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| |||||||||||||| || ||||||||||||||||| |||||||||| ||||||||||||| |||||    
T  15318 attaggttacgtgtgacgctggaataaggaactctaatcctaacaagtttcacgccttattaatctcaattt 15247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 21332069 - 21332140
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| |||||||||||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  21332069 attaggttacgtgtgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 21332140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 21341957 - 21342028
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| |||||||||||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  21341957 attaggttacgtgtgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 21342028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 15852697 - 15852626
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||| |||||||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  15852697 attaggttaagtgtgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 15852626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 29485074 - 29485003
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  29485074 attaggttacgtgcgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 29485003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 45012130 - 45012059
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  45012130 attaggttacgtgcgacgcttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 45012059  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 12950943 - 12950872
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||| | ||||||||||||| |||||    
T  12950943 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttttacgccttattaatctcaattt 12950872  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 36782259 - 36782330
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| |||||||||||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| |||||    
T  36782259 attaggttacgtgtgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaattt 36782330  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 42931447 - 42931518
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| |||||||||||  ||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  42931447 attaggttacgtgtgacatttgatcaaggaactctaatcctaacaagtttcacgccctattaatctcaattt 42931518  T

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Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 45700719 - 45700784
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    ||||| ||| |||||||| ||||| ||||||||||||| || |||||||||| |||||||||||||    
T  45700719 attaggttatgtgtgacgtttgatcaaggaactctaattctaacaagtttcacgccttattaatct 45700784  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 34834887 - 34834958
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| |||||    
T  34834887 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaattt 34834958  T

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Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 34841331 - 34841402
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| |||||    
T  34841331 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaattt 34841402  T

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Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 43268006 - 43267935
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| |||||    
T  43268006 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaattt 43267935  T

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Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 2157759 - 2157689
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaatt 100  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| ||||    
T  2157759 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaatt 2157689  T

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Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 2164175 - 2164105
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaatt 100  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| ||||    
T  2164175 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaatt 2164105  T

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Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 13902032 - 13902102
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaatt 100  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| ||||    
T  13902032 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaatt 13902102  T

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Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 2021523 - 2021572
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagttt 79  Q
    ||||| ||| |||||||||||||| |||||||||||||||| ||||||||    
T  2021523 attaggttatgtgtgacgcttgatcaaggaactctaatcctaacaagttt 2021572  T

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Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 11910044 - 11910092
Alignment:
Q  47 gcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    ||||||| |||||||||||||||| |||||||| | |||||||||||||    
T  11910044 gcttgatcaaggaactctaatcctaacaagttttacgccttattaatct 11910092  T

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Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 16856562 - 16856627
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    ||||| ||| |||||||||||||| ||| |||||||||||| |||||| | | ||| |||||||||    
T  16856562 attaggttatgtgtgacgcttgatcaagaaactctaatcctaacaagtnttacgccctattaatct 16856627  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 16817405 - 16817470
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    ||||| ||| |||||||||||||| ||| |||||||||||| |||||| | | ||| |||||||||    
T  16817405 attaggttatgtgtgacgcttgatcaagaaactctaatcctaacaagtgttacgccctattaatct 16817470  T

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Target: scaffold0936 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0936
Description:

Target: scaffold0936; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 3338 - 3404
Alignment:
Q  29 aattagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    |||||| ||| |||||| ||||||| |||||||||||||||| |||||||||| |||||||||||||    
T  3338 aattaggttaagtgtgaagcttgatcaaggaactctaatcctaacaagtttcacgccttattaatct 3404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 5080 - 5151
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatctaaattt 101  Q
    ||||| ||||||| |||||| ||| |||||||||||||||| |||||||| | ||| ||||||||| |||||    
T  5080 attaggttacgtgcgacgctcgatcaaggaactctaatcctaacaagttttacgccctattaatctcaattt 5151  T

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Target: scaffold0513 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0513
Description:

Target: scaffold0513; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 12080 - 12031
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagttt 79  Q
    ||||| |||||||||||||| ||| |||||||||||||||| ||||||||    
T  12080 attaggttacgtgtgacgctcgatcaaggaactctaatcctaacaagttt 12031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 49837 - 49772
Alignment:
Q  30 attagattacgtgtgacgcttgattaaggaactctaatcctcacaagtttcatgccttattaatct 95  Q
    ||||| ||| ||| |||||||||| |||||||||||||||| |||||||| | ||| |||||||||    
T  49837 attaggttatgtgcgacgcttgatgaaggaactctaatcctaacaagttttacgccctattaatct 49772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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