View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0942_low_34 (Length: 451)
Name: NF0942_low_34
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_34 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 9500605 - 9500681
Alignment:
| Q |
7 |
ctccacccttcagctaaagtgaaacttgactaggttctagggtgtatggaagaccatagttgaattttctgtgctcc |
83 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9500605 |
ctccacccttcagctaaagtgaaacttgactaggttctagggtgtatggaagaccatagttgaattttctgttctcc |
9500681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 88 - 224
Target Start/End: Original strand, 7922650 - 7922786
Alignment:
| Q |
88 |
tcatacaattatcattcaatattttcaagtaagttctataataaaattaacattcctaaatacagttttcaatataacgaaatgctatgcatttgtttag |
187 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| ||||| ||||||||||||||||| ||||| |||||||||| || ||| ||||||||||||| | |
|
|
| T |
7922650 |
tcatacaattatcatttaatattttcatgtaagatctatgataaaattaacattccttgatacaattttcaatatgacaaaaatatatgcatttgttttg |
7922749 |
T |
|
| Q |
188 |
gtgttttttgtatgattctttgcttaactactcacaa |
224 |
Q |
| |
|
|| ||||| |||||| |||| |||||||||||||||| |
|
|
| T |
7922750 |
gtatttttcgtatgactcttagcttaactactcacaa |
7922786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 388 - 443
Target Start/End: Original strand, 7919468 - 7919523
Alignment:
| Q |
388 |
cttgaagtgcatgtcaccactctaatgctaacaacatcctaaaaggtgcctatgct |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7919468 |
cttgaagtgcatgtcaccactctaatgctaacaacatcctaaaaggggcctatgct |
7919523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 37655228 - 37655285
Alignment:
| Q |
236 |
cataattttctcaatgtttgttataatataaaatatatatttgaagttaataaccata |
293 |
Q |
| |
|
|||||||||||||| ||||||||||| | ||||||| ||||| |||||| ||||||| |
|
|
| T |
37655228 |
cataattttctcaaagtttgttataacaaaaaatatgtatttttagttaagaaccata |
37655285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University