View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0942_low_35 (Length: 445)

Name: NF0942_low_35
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0942_low_35
NF0942_low_35
[»] chr7 (1 HSPs)
chr7 (30-418)||(4023760-4024144)
[»] chr8 (2 HSPs)
chr8 (327-425)||(22652002-22652100)
chr8 (363-419)||(15023209-15023265)
[»] chr4 (2 HSPs)
chr4 (327-411)||(19312361-19312445)
chr4 (367-419)||(28964200-28964252)
[»] chr6 (3 HSPs)
chr6 (265-314)||(322486-322535)
chr6 (328-425)||(10294134-10294231)
chr6 (363-419)||(17435261-17435317)
[»] chr1 (1 HSPs)
chr1 (329-404)||(9629856-9629931)
[»] chr5 (1 HSPs)
chr5 (327-405)||(40131647-40131725)
[»] chr2 (1 HSPs)
chr2 (363-425)||(27286227-27286289)


Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 30 - 418
Target Start/End: Original strand, 4023760 - 4024144
Alignment:
Q  30 ggccctatgaagctgattaataattaatgtggctggtttttagttgctttcaagcattaataagtgccatgcgtgtatatgtagggtaagtgctactaaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4023760 ggccctatgaagctgattaataattaatgtggctggtttttagttgctttcaagcattaataagtgccatgcgtgtatatgtagggtaagtgctactaaa 4023859  T
Q  130 tagtgcacaaatgagttaggtgttatgttatccacaaatctgcttgcagcgttgaatcaataaattttattatcagatcaaatgagatacgataagattt 229  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4023860 tagtgcacaaatgagttaggtgttatgttatccacaaatttgcttccatcgttgaatcaataaattttattatcagatcaaatgagatacgataagattt 4023959  T
Q  230 attactcgaagaacaacttatgtgcgatataactcatgaaacacggatacagacacgacatagacaccgacataactaataatttnnnnnnnnnntgaca 329  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||| ||||||||||||          |||||    
T  4023960 attactcgaagaacaacttatgtgcgatataactcatg-aacacggattcggacacgacatagacaccgacacaactaataattt---aaaaaaatgaca 4024055  T
Q  330 taattcaatataattataagtatcggcgtcgtatcgatgtcggatacgacatatatccgatactgggacacgtctaatctgaagagtgt 418  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||| ||||||||||||||||||    
T  4024056 taatttaatataattataagtatcggcgtcgtatcgatgtcggatacgacacatatccgataataggacatgtctaatctgaagagtgt 4024144  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 327 - 425
Target Start/End: Original strand, 22652002 - 22652100
Alignment:
Q  327 acataattcaatataattataagtatcggcgtcgtatcgatgtcggatacgacatatatccgatactgggacacgtctaatctgaagagtgtctgtgct 425  Q
    ||||||||||||||||||| |||| |||| ||||| ||| ||||||| ||||||| | ||||| || ||||||||||||||| || ||||||| |||||    
T  22652002 acataattcaatataattacaagtgtcggtgtcgtgtcggtgtcggacacgacatgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgct 22652100  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 419
Target Start/End: Complemental strand, 15023265 - 15023209
Alignment:
Q  363 tcgatgtcggatacgacatatatccgatactgggacacgtctaatctgaagagtgtc 419  Q
    ||||||||||||||||||  | |||||| |||| |||||||||||| || |||||||    
T  15023265 tcgatgtcggatacgacacgtgtccgatgctggaacacgtctaatccgaggagtgtc 15023209  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 327 - 411
Target Start/End: Original strand, 19312361 - 19312445
Alignment:
Q  327 acataattcaatataattataagtatcggcgtcgtatcgatgtcggatacgacatatatccgatactgggacacgtctaatctga 411  Q
    |||| ||||| | |||||||||||||||| ||||| ||| ||||||||||||||  | ||||| || | ||||||||||||||||    
T  19312361 acatgattcagtgtaattataagtatcggtgtcgtgtcgttgtcggatacgacacgtgtccgacaccgagacacgtctaatctga 19312445  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 419
Target Start/End: Complemental strand, 28964252 - 28964200
Alignment:
Q  367 tgtcggatacgacatatatccgatactgggacacgtctaatctgaagagtgtc 419  Q
    ||||||| |||||| |||||||| ||||||||||| |||||| || |||||||    
T  28964252 tgtcggacacgacacatatccgacactgggacacgcctaatccgaggagtgtc 28964200  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 322486 - 322535
Alignment:
Q  265 atgaaacacggatacagacacgacatagacaccgacataactaataattt 314  Q
    |||||||| |||||||||||||||| |||||||||||  |||||||||||    
T  322486 atgaaacatggatacagacacgacacagacaccgacaccactaataattt 322535  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 425
Target Start/End: Original strand, 10294134 - 10294231
Alignment:
Q  328 cataattcaatataattataagtatcggcgtcgtatcgatgtcggatacgacatatatccgatactgggacacgtctaatctgaagagtgtctgtgct 425  Q
    |||| |||||| |||||||| || |||| ||||| | | ||||||| ||||||| | ||||| ||| ||||||  ||||||||| |||||||||||||    
T  10294134 catatttcaatgtaattatatgtgtcggtgtcgtgttggtgtcggacacgacatgtgtccgaaactaggacacagctaatctgaggagtgtctgtgct 10294231  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 419
Target Start/End: Original strand, 17435261 - 17435317
Alignment:
Q  363 tcgatgtcggatacgacatatatccgatactgggacacgtctaatctgaagagtgtc 419  Q
    ||||||||||| ||||||  | | ||| |||||||||||||||||||||| ||||||    
T  17435261 tcgatgtcggacacgacacgtgttcgacactgggacacgtctaatctgaaaagtgtc 17435317  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 404
Target Start/End: Complemental strand, 9629931 - 9629856
Alignment:
Q  329 ataattcaatataattataagtatcggcgtcgtatcgatgtcggatacgacatatatccgatactgggacacgtct 404  Q
    |||||||| | | ||||||||| |||| ||||| ||||||||||| |||||| || ||||| || |||||||||||    
T  9629931 ataattcagtgtgattataagtgtcggtgtcgtgtcgatgtcggacacgacacatgtccgacaccgggacacgtct 9629856  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 405
Target Start/End: Original strand, 40131647 - 40131725
Alignment:
Q  327 acataattcaatataattataagtatcggcgtcgtatcgatgtcggatacgacatatatccgatactgggacacgtcta 405  Q
    |||||||||| | ||||||||| |||||| |||||||||||||| || ||||| | | || || | |||||||||||||    
T  40131647 acataattcagtttaattataaatatcggtgtcgtatcgatgtcagacacgacttgtgtctgacattgggacacgtcta 40131725  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 425
Target Start/End: Complemental strand, 27286289 - 27286227
Alignment:
Q  363 tcgatgtcggatacgacatatatccgatactgggacacgtctaatctgaagagtgtctgtgct 425  Q
    ||||||||||| |||||| || ||||| || ||||||  |||||||| |||||||||||||||    
T  27286289 tcgatgtcggacacgacacatgtccgacaccgggacatatctaatctaaagagtgtctgtgct 27286227  T

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