View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0942_low_37 (Length: 439)
Name: NF0942_low_37
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_37 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 14 - 411
Target Start/End: Original strand, 51909472 - 51909869
Alignment:
| Q |
14 |
atataccaccggtgtaactatattgcacaagagtttgaaatttggtgtattatgtttgatatgatatgggtgtgtcaaaatcatgtttgatccgtcaagt |
113 |
Q |
| |
|
||||||||| | ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||| |||||||||| ||||| |||||| |
|
|
| T |
51909472 |
atataccactgatgtaactatattgcacacgagtttgaaatttggtatattatgtttgatatgatatgtgtgtgttaaaatcatgtatgatctatcaagt |
51909571 |
T |
|
| Q |
114 |
ttgttaaatacttaaaactaaacaaaggataacaataattctgacatcctataaaatcaaatgaaagatcaatatgattctgacacacccatagtaaaac |
213 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||| ||| | |||||||||| || ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
51909572 |
ttgttaaaaacttaaaactaaacaaaggataacaatgattgtgatacactataaaatccaacgaaagatcaatatgattctgacacacccacggtaaaat |
51909671 |
T |
|
| Q |
214 |
caaacatatgtttggtgtatttatttacttaggggtttgtgagtgttagttaattatcccttgttgtcagagggtatttactgcctctgtgacagtagtc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51909672 |
caaacatatgtttggtgtatttatttacttaggggtttgtgggtgttagttaattatcccttgttgtcagagggtatttactgcctctgtgacagtagtc |
51909771 |
T |
|
| Q |
314 |
atttcatttcataagtattgagaattcacacctaacctaaccaaccttatttgccgcttcttctttgtcacttaccattactattgttacttgtgcct |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51909772 |
atttcatttcataagtattgagaattcacacctaacctaaccaaccttatttgccgcttcttctttgtcacttaccattactattgttacttgtgcct |
51909869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University