View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0942_low_42 (Length: 433)
Name: NF0942_low_42
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_42 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 3056984 - 3056580
Alignment:
| Q |
1 |
caaccaatgcacctaaagcaccatctttgtagcaatcataagcccaatcagttaaaattgctttgtcttcatcttcttcatccatttcttcaacacattt |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3056984 |
caaccaatgcacataaagcaccatctttgtagcaatcataagcccaatcagttaaaattgctttgtcttcatcttcttcatccatttcttcaacacattt |
3056885 |
T |
|
| Q |
101 |
tctacatgaaattatctcaagtagcactacaccataactatacacatccaccttagctgtgataggcatgtttttaaaccattcaagtgcaacataccct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3056884 |
tctacatgaaattatctcaagtagcactacaccataactatacacatccaccttagctgtgataggcatgtttttaaaccattcaagtgcaacataccct |
3056785 |
T |
|
| Q |
201 |
tttgttcctcttatgccagtgttggttttgctttgattcatgttcaacaacttggctaatccaaaatcagaaattcttgcattgaaataatcatccagga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3056784 |
tttgttcctcttatgccagtgttggttttgctttgattcatgttcaacaacttggctaatccaaaatcagaaattcttgcattgaaataatcatccagga |
3056685 |
T |
|
| Q |
301 |
gtatgttttgaggctttatgtcacaatggataatcctagtgatgcactcttcatgtaaatacacaagtcctctagctattcctattgcaagttctagcct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3056684 |
gtatgttttgaggctttatgtcacaatggataatcctagtgatgcactcttcatgtaaatacacaagtcctctagctattcctattgcaagttctagcct |
3056585 |
T |
|
| Q |
401 |
tagtt |
405 |
Q |
| |
|
||||| |
|
|
| T |
3056584 |
tagtt |
3056580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 3036116 - 3035712
Alignment:
| Q |
1 |
caaccaatgcacctaaagcaccatctttgtagcaatcataagcccaatcagttaaaattgctttgtcttcatcttcttcatccatttcttcaacacattt |
100 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3036116 |
caaccaatgcatctaaagcaccatcattgtagcaatcataagcccaatcagttaaaattgctttgtcttcatcttcttcatccatttcttcaacacattt |
3036017 |
T |
|
| Q |
101 |
tctacatgaaattatctcaagtagcactacaccataactatacacatccaccttagctgtgataggcatgtttttaaaccattcaagtgcaacataccct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3036016 |
tctacatgaaattatctcaagtagcactacaccataactatacacatccaccttagctgtgataggcatgtttttaaaccattcaagtgcaacataccct |
3035917 |
T |
|
| Q |
201 |
tttgttcctcttatgccagtgttggttttgctttgattcatgttcaacaacttggctaatccaaaatcagaaattcttgcattgaaataatcatccagga |
300 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
3035916 |
tttattcctcttatgccggtgttggttttgctttgattcatgttcaacaactttgctaatccaaaatcagaaattcttgcattgaagtaatcatcaagga |
3035817 |
T |
|
| Q |
301 |
gtatgttttgaggctttatgtcacaatggataatcctagtgatgcactcttcatgtaaatacacaagtcctctagctattcctattgcaagttctagcct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3035816 |
gtatgttttgaggctttatgtcacaatgaatgatcctagtgatgcactcttcatgtaaatacacaagtcctctagctattcctattgcaagttctagcct |
3035717 |
T |
|
| Q |
401 |
tagtt |
405 |
Q |
| |
|
||||| |
|
|
| T |
3035716 |
tagtt |
3035712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 3069928 - 3070332
Alignment:
| Q |
1 |
caaccaatgcacctaaagcaccatctttgtagcaatcataagcccaatcagttaaaattgctttgtcttcatcttcttcatccatttcttcaacacattt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3069928 |
caaccaatgcacctaaagcaccatatttgtagcaatcataagcccaatcagttaagatagctttgtcttcatcttcttcatccatttcttcaacacattt |
3070027 |
T |
|
| Q |
101 |
tctacatgaaattatctcaagtagcactacaccataactatacacatccaccttagctgtgataggcatgtttttaaaccattcaagtgcaacataccct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3070028 |
tctacatgaaattatctcaagtagcactacaccataactatacacatcaaccttagctgtgataggcatgtttttaaaccattcaagtgcaacataccct |
3070127 |
T |
|
| Q |
201 |
tttgttcctcttatgccagtgttggttttgctttgattcatgttcaacaacttggctaatccaaaatcagaaattcttgcattgaaataatcatccagga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
3070128 |
tttgttcctcttatgccagtgttggttttgctttgattcatgttcaacagctttgctaatccaaaatcagaaattcttgcattgaagtaatcatcaagga |
3070227 |
T |
|
| Q |
301 |
gtatgttttgaggctttatgtcacaatggataatcctagtgatgcactcttcatgtaaatacacaagtcctctagctattcctattgcaagttctagcct |
400 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3070228 |
gtatgttctgaggctttatgtcacaatggatgatcctagtgatgcactcttcatgtaaatacacaagtcctctagctatacctattgcaagttctagcct |
3070327 |
T |
|
| Q |
401 |
tagtt |
405 |
Q |
| |
|
||||| |
|
|
| T |
3070328 |
tagtt |
3070332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 3048990 - 3049081
Alignment:
| Q |
24 |
tctttgtagcaatcataagcccaatcagttaaaattgctttgtcttcatcttcttcatccatttcttcaacacattttctacatgaaattat |
115 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| || ||||||| ||||| ||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3048990 |
tctttgtagcagtcataagcccattcagttaagatagctttgtattcattttcttgatccatttcttcaacacatcttctacatgaaattat |
3049081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 159 - 389
Target Start/End: Complemental strand, 21457736 - 21457501
Alignment:
| Q |
159 |
gtgataggcatgtttttaaa-ccattcaagtgcaacatacccttttgttcctcttatgccagtgttggttttgctttgattcatgttcaacaacttggct |
257 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| || ||||| |||| |||| |||||| |||||||||||| ||| ||||||||||||||| || ||| |
|
|
| T |
21457736 |
gtgatatgcatgtttttaaaaccattcaagtgaaagataccattttcttccccttatggcagtgttggtttcgctcaaattcatgttcaacaattttgct |
21457637 |
T |
|
| Q |
258 |
aatccaaaatcagaaattcttgcattgaaataatcatccaggagtatgttttgaggctttatgtcacaa-----tggataatcctagtgatgcactcttc |
352 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| | | |||||||||||||||||||||||||| | ||| |||||| ||||| ||||||| |
|
|
| T |
21457636 |
aatccaaagtcagaaattcttgcattgaagtaatcatcaatgggtatgttttgaggctttatgtcacaagtcaatagatgatcctattgatggactcttc |
21457537 |
T |
|
| Q |
353 |
atgtaaatacacaagtcctctagctattcctattgca |
389 |
Q |
| |
|
||||||| | || ||| |||||||||| ||||||||| |
|
|
| T |
21457536 |
atgtaaa-ataccagtactctagctatccctattgca |
21457501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 187 - 331
Target Start/End: Complemental strand, 28445582 - 28445438
Alignment:
| Q |
187 |
gtgcaacatacccttttgttcctcttatgccagtgttggttttgctttgattcatgttcaacaacttggctaatccaaaatcagaaattcttgcattgaa |
286 |
Q |
| |
|
|||||||||| || || ||||||||||| ||||| | ||| | ||||||||| || ||| ||||| |||||||||||||| ||||||||||||||| | |
|
|
| T |
28445582 |
gtgcaacatatcccttagttcctcttattccagtttcggtatggctttgattaatcaacaataactttgctaatccaaaatctgaaattcttgcattgta |
28445483 |
T |
|
| Q |
287 |
ataatcatccaggagtatgttttgaggctttatgtcacaatggat |
331 |
Q |
| |
|
| |||||| || ||||| ||||| |||||||| || |||||||| |
|
|
| T |
28445482 |
ttgatcatctagaagtatattttgtggctttatatcgcaatggat |
28445438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 331
Target Start/End: Complemental strand, 28488189 - 28488045
Alignment:
| Q |
187 |
gtgcaacatacccttttgttcctcttatgccagtgttggttttgctttgattcatgttcaacaacttggctaatccaaaatcagaaattcttgcattgaa |
286 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| | || | ||||||||| || ||| | ||| | |||||||||||| ||||| ||||||||| | |
|
|
| T |
28488189 |
gtgcaacatacccttttgttcctctaattccagtttcagtgtggctttgattaatcaacaatagctttgataatccaaaatctgaaatccttgcattgta |
28488090 |
T |
|
| Q |
287 |
ataatcatccaggagtatgttttgaggctttatgtcacaatggat |
331 |
Q |
| |
|
| |||||| || ||||| ||||| |||||||| ||||||||||| |
|
|
| T |
28488089 |
ttgatcatctagaagtatattttgtggctttatatcacaatggat |
28488045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 187 - 331
Target Start/End: Complemental strand, 28466428 - 28466284
Alignment:
| Q |
187 |
gtgcaacatacccttttgttcctcttatgccagtgttggttttgctttgattcatgttcaacaacttggctaatccaaaatcagaaattcttgcattgaa |
286 |
Q |
| |
|
|||||||||||||||| |||||||| || ||||| | || | ||||||||| || ||| | ||| | |||||||||||| ||||| ||||||||| | |
|
|
| T |
28466428 |
gtgcaacataccctttggttcctctaattccagtttcagtgtggctttgattaatcaacaatagctttgataatccaaaatctgaaatccttgcattgta |
28466329 |
T |
|
| Q |
287 |
ataatcatccaggagtatgttttgaggctttatgtcacaatggat |
331 |
Q |
| |
|
| |||||| || ||||| ||||| |||||||| ||||||||||| |
|
|
| T |
28466328 |
ttgatcatctagaagtatattttgtggctttatatcacaatggat |
28466284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 331
Target Start/End: Complemental strand, 28438041 - 28437989
Alignment:
| Q |
279 |
gcattgaaataatcatccaggagtatgttttgaggctttatgtcacaatggat |
331 |
Q |
| |
|
|||||| ||| |||||| || ||||||||||| |||||||||||||||||||| |
|
|
| T |
28438041 |
gcattgtaatcatcatctagaagtatgttttgtggctttatgtcacaatggat |
28437989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 58
Target Start/End: Complemental strand, 28445739 - 28445708
Alignment:
| Q |
27 |
ttgtagcaatcataagcccaatcagttaaaat |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
28445739 |
ttgtagcaatcataagcccaatcagttaaaat |
28445708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 28488343 - 28488302
Alignment:
| Q |
30 |
tagcaatcataagcccaatcagttaaaattgctttgtcttca |
71 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
28488343 |
tagcaatcataagcccaatcagttaaaatccctttttcttca |
28488302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 28466582 - 28466554
Alignment:
| Q |
30 |
tagcaatcataagcccaatcagttaaaat |
58 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
28466582 |
tagcaatcataagcccaatcagttaaaat |
28466554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 319
Target Start/End: Complemental strand, 11004968 - 11004904
Alignment:
| Q |
255 |
gctaatccaaaatcagaaattcttgcattgaaataatcatccaggagtatgttttgaggctttat |
319 |
Q |
| |
|
||||||||||||||||||| | ||| |||||||| ||||| || || ||||| ||||||||||| |
|
|
| T |
11004968 |
gctaatccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttat |
11004904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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