View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_low_44 (Length: 431)
Name: NF0942_low_44
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_44 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 26 - 431
Target Start/End: Original strand, 45400029 - 45400434
Alignment:
| Q |
26 |
aagctattgaagttaatagtacgtgacgtaataaatatatgtaaagaaaaagtgagtctggcataaatgatgctagaataaaaataaaagcaattaagtt |
125 |
Q |
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| T |
45400029 |
aagctattgaagttaatagtacgtgacgtgataaatatatgtaaagaaaaagtgagtctgacataaatgatactagaataaaaataaaagcaattaagtt |
45400128 |
T |
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| Q |
126 |
aagataggaaattcaaagaagagaaagtgacaccattaaaaggaaaaacccgtctaattagaaggattaaagagattggagtcggtagagtgggtagtgc |
225 |
Q |
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| T |
45400129 |
aagataggaaattcaaagaagagaaagtgacaccattaaaaggaaaaacccgtgtaattagaaggattaaagagattggagtcggtagagtgggtagtgc |
45400228 |
T |
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| Q |
226 |
gtagtcacatttttgtattcttccatggactaagatgcaagccataaaggaaaactagttaagacttctgagtctcataatgtgaagttttggtgtaatg |
325 |
Q |
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| T |
45400229 |
gtagtcacatttttgtattcttccatggactaagatgcaagccataaaggaaaaccagttaagacttctgagtctcataatgtgaagttttggtgtaatg |
45400328 |
T |
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| Q |
326 |
ttagatttgaatatgatgtcatcatgctaacattgaccagaaagtaccattacattaattcaatgccaaaattttcaataagtgagatgttgatttaata |
425 |
Q |
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| T |
45400329 |
ttagatttgaatatgatgtcatcatgctaacattgaccagaaagtaccattacattaattcaatgccaaaattttcaataagtgagatgttgatttaata |
45400428 |
T |
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| Q |
426 |
agttca |
431 |
Q |
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| T |
45400429 |
agttca |
45400434 |
T |
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