View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_low_45 (Length: 428)
Name: NF0942_low_45
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 69 - 414
Target Start/End: Original strand, 43807908 - 43808253
Alignment:
| Q |
69 |
atggcttcccttgctactagcttagcttgtgtacaaccagctggtctcaatgtcaagggtcttgctggcagttccattactggaactaagctaactttca |
168 |
Q |
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| T |
43807908 |
atggcttcccttgctactagcttagcttgtgtacaaccagctggtctcaatgtcaagggtcttgctggcagttccattactggaactaagctaactttca |
43808007 |
T |
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| Q |
169 |
agccctctcgccagagtttcaaatccaacaatttaaggtactttcacaactttcaagatattaaataaactcatattgtatgtctatgttttgtagaagc |
268 |
Q |
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| T |
43808008 |
agccctctcgccagattttcaaatccaacaatttaaggtactttcacaactttcaagatattaaataaactcatattttatgtctatgttttgtagaagc |
43808107 |
T |
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| Q |
269 |
cagataaatataaatattgctttatttgggttataataattgtatgtgaaagcttaacataacataattaatatgcaggagtggctctgtagtagcaaag |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43808108 |
cagataaatataaatattgctttatttgggttataataattgtatgtgaaagcttaacataacataattaatatgcaggagtggctctgtagtagcaaag |
43808207 |
T |
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| Q |
369 |
tatggtgacaagagtgtgtactttgatttggaggatattggcaaca |
414 |
Q |
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| T |
43808208 |
tatggtgacaagagtgtgtactttgatttggaggatattggcaaca |
43808253 |
T |
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