View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_low_46 (Length: 428)
Name: NF0942_low_46
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_46 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 96 - 428
Target Start/End: Original strand, 37304170 - 37304501
Alignment:
| Q |
96 |
actttggtcgtggagacaacaaaatctgcgttgattttaatctcatacnnnnnnngaacgccgaaaaatataggttttgatcccctacaatagcgttgct |
195 |
Q |
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| T |
37304170 |
actttggtcgtggagacaacaaaatctgcattgattttaatctcatactttttcc-aacgccgaaaaatataggtttcgatcccctacaatagtgttgtt |
37304268 |
T |
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| Q |
196 |
gcaccgtgcaactgttgtaggggatccaagacctcgaatgtatttgttatctcattttttaaccgcatttagttcaaccagattggtctcgatatatgtg |
295 |
Q |
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| T |
37304269 |
gcaccgtgcaactgttgtaggggatccaagacctcgaatgtatttgttatctcattttttaaccgcatttagttcaaccagattggtctcgatatatgtg |
37304368 |
T |
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| Q |
296 |
tctatcaatcgcaccataaacttggtgtagtttttgaatcaatgcgatgaatgtatacctcttctcgaaggcgagaattttcaatcctcaagtgatgttc |
395 |
Q |
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| T |
37304369 |
tctatcaatcgcaccataaacttggtgtagtttttgaatcaatgcgatgaatgtatacctcttctcgaaggcgagaattttcaatcctcaagtgatgttc |
37304468 |
T |
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| Q |
396 |
atcaaacgacatttctccgatagcagttggtcc |
428 |
Q |
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| T |
37304469 |
atcaaacgacatttctccgatagcagttggtcc |
37304501 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 372 - 425
Target Start/End: Complemental strand, 16825536 - 16825483
Alignment:
| Q |
372 |
attttcaatcctcaagtgatgttcatcaaacgacatttctccgatagcagttgg |
425 |
Q |
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| T |
16825536 |
attttcaagcctcaaatgatgttcatcaaatgacatttcacctatagctgttgg |
16825483 |
T |
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