View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0942_low_47 (Length: 416)

Name: NF0942_low_47
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0942_low_47
NF0942_low_47
[»] chr8 (12 HSPs)
chr8 (100-343)||(29289059-29289302)
chr8 (9-62)||(8054938-8054991)
chr8 (9-55)||(12329557-12329603)
chr8 (244-313)||(29235094-29235163)
chr8 (12-61)||(31202371-31202420)
chr8 (12-53)||(41361653-41361694)
chr8 (12-55)||(9501514-9501557)
chr8 (12-55)||(10338991-10339034)
chr8 (12-55)||(31407918-31407961)
chr8 (9-52)||(41996508-41996551)
chr8 (12-53)||(2234637-2234678)
chr8 (12-53)||(39067877-39067918)
[»] chr5 (14 HSPs)
chr5 (346-412)||(37525889-37525955)
chr5 (346-412)||(37588050-37588116)
chr5 (346-412)||(37690326-37690392)
chr5 (346-412)||(37618624-37618690)
chr5 (346-412)||(37794392-37794458)
chr5 (346-412)||(37787645-37787711)
chr5 (12-61)||(39531554-39531603)
chr5 (13-69)||(5378256-5378313)
chr5 (12-55)||(17699478-17699521)
chr5 (12-51)||(20483112-20483151)
chr5 (12-53)||(6635173-6635214)
chr5 (26-55)||(17331249-17331278)
chr5 (22-55)||(39179984-39180017)
chr5 (15-55)||(23882263-23882303)
[»] chr3 (9 HSPs)
chr3 (346-412)||(14548412-14548478)
chr3 (12-55)||(13702142-13702185)
chr3 (10-55)||(40884019-40884064)
chr3 (12-52)||(39610132-39610172)
chr3 (12-54)||(11818990-11819033)
chr3 (12-54)||(48854826-48854868)
chr3 (26-55)||(32080933-32080962)
chr3 (26-55)||(33637340-33637369)
chr3 (26-55)||(48652622-48652651)
[»] chr2 (9 HSPs)
chr2 (9-67)||(7640486-7640544)
chr2 (12-55)||(12891248-12891291)
chr2 (15-60)||(13740818-13740863)
chr2 (16-52)||(34417030-34417066)
chr2 (12-55)||(12704612-12704655)
chr2 (12-55)||(22597058-22597100)
chr2 (24-55)||(36867933-36867964)
chr2 (12-55)||(38384604-38384647)
chr2 (12-49)||(17268286-17268323)
[»] chr1 (8 HSPs)
chr1 (9-69)||(23320376-23320436)
chr1 (9-69)||(21326397-21326457)
chr1 (12-55)||(5832165-5832208)
chr1 (12-55)||(28678295-28678338)
chr1 (12-55)||(37825474-37825517)
chr1 (12-55)||(45750400-45750443)
chr1 (26-55)||(29205207-29205236)
chr1 (12-44)||(13152581-13152613)
[»] chr6 (6 HSPs)
chr6 (9-62)||(19759719-19759772)
chr6 (12-55)||(1302653-1302696)
chr6 (12-55)||(6420014-6420057)
chr6 (12-55)||(8693813-8693856)
chr6 (26-55)||(12481541-12481570)
chr6 (26-55)||(23654165-23654194)
[»] chr4 (15 HSPs)
chr4 (9-69)||(46717033-46717093)
chr4 (12-55)||(478161-478204)
chr4 (12-52)||(24825559-24825599)
chr4 (12-55)||(22757019-22757062)
chr4 (12-53)||(7084126-7084168)
chr4 (12-54)||(25658090-25658132)
chr4 (12-54)||(27394750-27394792)
chr4 (10-55)||(43493415-43493460)
chr4 (12-52)||(29922762-29922802)
chr4 (12-55)||(20887921-20887964)
chr4 (12-50)||(30201950-30201988)
chr4 (12-53)||(8712454-8712495)
chr4 (26-55)||(19745331-19745360)
chr4 (26-55)||(19794446-19794475)
chr4 (10-55)||(26742617-26742662)
[»] chr7 (13 HSPs)
chr7 (12-54)||(21603377-21603419)
chr7 (10-55)||(10574303-10574348)
chr7 (12-55)||(6667318-6667360)
chr7 (16-55)||(21990589-21990628)
chr7 (9-55)||(40761520-40761566)
chr7 (13-53)||(9785242-9785282)
chr7 (23-55)||(46026208-46026240)
chr7 (12-55)||(11832940-11832983)
chr7 (12-55)||(21954974-21955017)
chr7 (10-55)||(45457710-45457755)
chr7 (9-62)||(30992953-30993008)
chr7 (12-52)||(41287879-41287919)
chr7 (9-45)||(43807280-43807316)
[»] scaffold0722 (1 HSPs)
scaffold0722 (9-69)||(5656-5716)
[»] scaffold0056 (1 HSPs)
scaffold0056 (10-52)||(74095-74137)
[»] scaffold1379 (1 HSPs)
scaffold1379 (10-55)||(1240-1285)
[»] scaffold0536 (1 HSPs)
scaffold0536 (12-52)||(2831-2871)


Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 100 - 343
Target Start/End: Original strand, 29289059 - 29289302
Alignment:
Q  100 agcaaaattaatattttagttatttctatctttcaaaactttcttaaatgaattcaatttcgcttttgtattcaaattgcaattagcatgttatccgcct 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||    
T  29289059 agcaaaattaatattttagttatttctatctttcaaaactttcttaaatgaattcaatttcggttttgcattcaaattgcaattagcatgttatccacct 29289158  T
Q  200 aattttaattctcatcaatcaagttaattagttctattgatttttatgcaggtcttctatcatctctatggagataaccgtcctagattgtttatttatt 299  Q
    |||||||||||  || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29289159 aattttaattcctattaatcaagttaattagttccattgatttttatgcaggtcttctatcatctctatggagatacccgtcctagattgtttatttatt 29289258  T
Q  300 ggacggtaggtaaaataggtgaaaaaagtgtaacatctattatt 343  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  29289259 ggacggtaggtaaagtaggtgaaaaaagtgtaacatctattatt 29289302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 8054938 - 8054991
Alignment:
Q  9 gaaaagaagaaaggagtgacggctagggtttgagaaggagagaagaggaagaga 62  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  8054938 gaaaagaagaaaggagtgacggctagggtttgagaaggagataagagaaagaga 8054991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 12329603 - 12329557
Alignment:
Q  9 gaaaagaagaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||    
T  12329603 gaaaagaagaaatgagtgacggttagggtttgagaaggagagaagag 12329557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 29235094 - 29235163
Alignment:
Q  244 tatgcaggtcttctatcatctctatggagataaccgtcctagattgtttatttattggacggtaggtaaa 313  Q
    |||||||||||||   || ||||||||||| ||||| ||||||||||||||||| ||||||||| |||||    
T  29235094 tatgcaggtcttcccacaactctatggagacaaccgccctagattgtttatttactggacggtaagtaaa 29235163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 31202420 - 31202371
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaagaggaagag 61  Q
    ||||||||||| |||||||||||||||||||||||| ||||||| |||||    
T  31202420 aagaagaaaggggtgacggctagggtttgagaaggatagaagagaaagag 31202371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 41361694 - 41361653
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaag 53  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  41361694 aagaagaaaggggtgacggctagggtttgagaaggagagaag 41361653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 9501557 - 9501514
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    ||||||||| |  |||||||||||||||||||||||||||||||    
T  9501557 aagaagaaaaggatgacggctagggtttgagaaggagagaagag 9501514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 10338991 - 10339034
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    |||||||||||||||||||||| | ||||||| |||||||||||    
T  10338991 aagaagaaaggagtgacggctatgatttgagatggagagaagag 10339034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 31407918 - 31407961
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    ||||||||| | |||||||||||| |||||||||||||||||||    
T  31407918 aagaagaaaagggtgacggctaggatttgagaaggagagaagag 31407961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 41996551 - 41996508
Alignment:
Q  9 gaaaagaagaaaggagtgacggctagggtttgagaaggagagaa 52  Q
    |||||||||||| |||||||||||||| ||| ||||||||||||    
T  41996551 gaaaagaagaaatgagtgacggctaggatttaagaaggagagaa 41996508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 2234637 - 2234678
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaag 53  Q
    ||||||||| ||||||| | ||||||||||||||||||||||    
T  2234637 aagaagaaaagagtgacagttagggtttgagaaggagagaag 2234678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 39067877 - 39067918
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaag 53  Q
    ||||||||| | |||||||||||||||||||||| |||||||    
T  39067877 aagaagaaaagggtgacggctagggtttgagaagaagagaag 39067918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 346 - 412
Target Start/End: Complemental strand, 37525955 - 37525889
Alignment:
Q  346 aattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttg 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37525955 aattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttg 37525889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 346 - 412
Target Start/End: Complemental strand, 37588116 - 37588050
Alignment:
Q  346 aattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttg 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37588116 aattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttg 37588050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 346 - 412
Target Start/End: Complemental strand, 37690392 - 37690326
Alignment:
Q  346 aattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttg 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37690392 aattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttg 37690326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 346 - 412
Target Start/End: Complemental strand, 37618690 - 37618624
Alignment:
Q  346 aattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttg 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37618690 aattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttacaccatgaagcttg 37618624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 346 - 412
Target Start/End: Complemental strand, 37794458 - 37794392
Alignment:
Q  346 aattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttg 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37794458 aattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttacaccatgaagcttg 37794392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 346 - 412
Target Start/End: Complemental strand, 37787711 - 37787645
Alignment:
Q  346 aattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttg 412  Q
    |||||||||||| ||||||||| ||||||||||||||  ||||||||||||||||||||||||||||    
T  37787711 aattgcatgcctcatgtaacttagcttcttctcttcagcccattgagcatttaaaccatgaagcttg 37787645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 39531554 - 39531603
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaagaggaagag 61  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||| ||||    
T  39531554 aagaataaaggggtgacggctagggtttgagaaggagagaagagggagag 39531603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 5378313 - 5378256
Alignment:
Q  13 agaagaaaggagtgacgg-ctagggtttgagaaggagagaagaggaagagataaaggc 69  Q
    |||||||||||||||||| ||||||||||||||| ||||||| | |||||| ||||||    
T  5378313 agaagaaaggagtgacgggctagggtttgagaagcagagaagtgaaagagaaaaaggc 5378256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 17699521 - 17699478
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    ||||||||| | |||||| |||||||||||||||||||||||||    
T  17699521 aagaagaaaagggtgacgactagggtttgagaaggagagaagag 17699478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 20483151 - 20483112
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagaga 51  Q
    ||||||||||| |||||||||| |||||||||||||||||    
T  20483151 aagaagaaaggggtgacggctaaggtttgagaaggagaga 20483112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 6635214 - 6635173
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaag 53  Q
    ||||||||||| ||||||||||| ||||||||| ||||||||    
T  6635214 aagaagaaaggggtgacggctagagtttgagaaagagagaag 6635173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 17331278 - 17331249
Alignment:
Q  26 gacggctagggtttgagaaggagagaagag 55  Q
    ||||||||||||||||||||||||||||||    
T  17331278 gacggctagggtttgagaaggagagaagag 17331249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 39179984 - 39180017
Alignment:
Q  22 gagtgacggctagggtttgagaaggagagaagag 55  Q
    ||||||||||||||||||||||| ||||||||||    
T  39179984 gagtgacggctagggtttgagaatgagagaagag 39180017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 23882263 - 23882303
Alignment:
Q  15 aagaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    |||||||| |||||||||| ||||||||||| |||||||||    
T  23882263 aagaaaggggtgacggctaaggtttgagaagtagagaagag 23882303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 346 - 412
Target Start/End: Complemental strand, 14548478 - 14548412
Alignment:
Q  346 aattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttg 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14548478 aattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttg 14548412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 13702142 - 13702185
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  13702142 aagaagaaaggggtgacggctatggtttgagaaggagagaagag 13702185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 40884019 - 40884064
Alignment:
Q  10 aaaagaagaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    |||||||||| |||| |||| |||||||||||||||||||||||||    
T  40884019 aaaagaagaagggagcgacgactagggtttgagaaggagagaagag 40884064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 39610172 - 39610132
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaa 52  Q
    ||||||||||| |||||| ||||||||||||||||||||||    
T  39610172 aagaagaaaggggtgacgtctagggtttgagaaggagagaa 39610132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 11819033 - 11818990
Alignment:
Q  12 aagaagaaaggag-tgacggctagggtttgagaaggagagaaga 54  Q
    ||||||||||| | ||||||||||||||||||||||||||||||    
T  11819033 aagaagaaagggggtgacggctagggtttgagaaggagagaaga 11818990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 48854868 - 48854826
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaaga 54  Q
    ||||||||||| ||||||||| | |||||||||||||||||||    
T  48854868 aagaagaaaggggtgacggctggagtttgagaaggagagaaga 48854826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Original strand, 32080933 - 32080962
Alignment:
Q  26 gacggctagggtttgagaaggagagaagag 55  Q
    ||||||||||||||||||||||||||||||    
T  32080933 gacggctagggtttgagaaggagagaagag 32080962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 33637369 - 33637340
Alignment:
Q  26 gacggctagggtttgagaaggagagaagag 55  Q
    ||||||||||||||||||||||||||||||    
T  33637369 gacggctagggtttgagaaggagagaagag 33637340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Original strand, 48652622 - 48652651
Alignment:
Q  26 gacggctagggtttgagaaggagagaagag 55  Q
    ||||||||||||||||||||||||||||||    
T  48652622 gacggctagggtttgagaaggagagaagag 48652651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 7640486 - 7640544
Alignment:
Q  9 gaaaagaagaaaggagtgacggctagggtttgagaaggagagaagaggaagagataaag 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  7640486 gaaaagaagaaaggagtgacggctagggtttgagaaggagagaagagaaagagaaaaag 7640544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 12891248 - 12891291
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    ||||||||||| |||||| |||||||||||||||||||||||||    
T  12891248 aagaagaaaggggtgacgactagggtttgagaaggagagaagag 12891291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 13740818 - 13740863
Alignment:
Q  15 aagaaaggagtgacggctagggtttgagaaggagagaagaggaaga 60  Q
    ||||||||| |||| |||||||||||||||| ||||||||||||||    
T  13740818 aagaaaggaatgacagctagggtttgagaagaagagaagaggaaga 13740863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 34417030 - 34417066
Alignment:
Q  16 agaaaggagtgacggctagggtttgagaaggagagaa 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  34417030 agaaaggagtgacggttagggtttgagaaggagagaa 34417066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 12704655 - 12704612
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    ||||||||| | |||||| |||||||||||||||||||||||||    
T  12704655 aagaagaaaagggtgacgactagggtttgagaaggagagaagag 12704612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 22597100 - 22597058
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    ||||||||||| |||||| |||||||||||||||||||||||||    
T  22597100 aagaagaaagg-gtgacgactagggtttgagaaggagagaagag 22597058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 55
Target Start/End: Complemental strand, 36867964 - 36867933
Alignment:
Q  24 gtgacggctagggtttgagaaggagagaagag 55  Q
    ||||||||||||||||||||||||||||||||    
T  36867964 gtgacggctagggtttgagaaggagagaagag 36867933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 38384604 - 38384647
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    ||||||||| | |||||||||||||||| |||||||||||||||    
T  38384604 aagaagaaacgggtgacggctagggtttcagaaggagagaagag 38384647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 17268286 - 17268323
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggaga 49  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  17268286 aagaagaaatgagtgacggttagggtttgagaaggaga 17268323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 23320436 - 23320376
Alignment:
Q  9 gaaaagaagaaaggagtgacggctagggtttgagaaggagagaagaggaagagataaaggc 69  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||    
T  23320436 gaaaagaagaaaggagtgacgactagggtttgagaaggagagaagagaaagagaaaaaggc 23320376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 21326457 - 21326397
Alignment:
Q  9 gaaaagaagaaaggagtgacggctagggtttgagaaggagagaagaggaagagataaaggc 69  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||| |||||| ||||||    
T  21326457 gaaaagaagaaagaagtgacggctagggtttgagaaagagagaagagaaagagaaaaaggc 21326397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 5832208 - 5832165
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  5832208 aagaagaaaggagtgacggctagggtttaagaaggagagaagag 5832165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 28678295 - 28678338
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  28678295 aagaagaaaggggtgacggctagggtttgagaaggagagaagag 28678338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 37825474 - 37825517
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  37825474 aagaagaaaagagtgacggctagggtttgagaaggagagaagag 37825517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 45750443 - 45750400
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    ||||||||||||||||| | ||||||||||| ||||||||||||    
T  45750443 aagaagaaaggagtgacagatagggtttgaggaggagagaagag 45750400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 29205236 - 29205207
Alignment:
Q  26 gacggctagggtttgagaaggagagaagag 55  Q
    ||||||||||||||||||||||||||||||    
T  29205236 gacggctagggtttgagaaggagagaagag 29205207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 13152613 - 13152581
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaa 44  Q
    ||||||||||| |||||||||||||||||||||    
T  13152613 aagaagaaaggggtgacggctagggtttgagaa 13152581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 19759772 - 19759719
Alignment:
Q  9 gaaaagaagaaaggagtgacggctagggtttgagaaggagagaagaggaagaga 62  Q
    ||||||||||||||||||||||| || |||||||||||||||||||| ||||||    
T  19759772 gaaaagaagaaaggagtgacggcaagagtttgagaaggagagaagagaaagaga 19759719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 1302696 - 1302653
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    ||||||||||| |||||||||||||||||||||||||| |||||    
T  1302696 aagaagaaaggggtgacggctagggtttgagaaggagaaaagag 1302653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 6420014 - 6420057
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    |||||||| || ||||||||||||||||||||||||||||||||    
T  6420014 aagaagaagggggtgacggctagggtttgagaaggagagaagag 6420057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 8693813 - 8693856
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    ||||||||| | ||||||||||| ||||||||||||||||||||    
T  8693813 aagaagaaaagggtgacggctagagtttgagaaggagagaagag 8693856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Original strand, 12481541 - 12481570
Alignment:
Q  26 gacggctagggtttgagaaggagagaagag 55  Q
    ||||||||||||||||||||||||||||||    
T  12481541 gacggctagggtttgagaaggagagaagag 12481570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 23654194 - 23654165
Alignment:
Q  26 gacggctagggtttgagaaggagagaagag 55  Q
    ||||||||||||||||||||||||||||||    
T  23654194 gacggctagggtttgagaaggagagaagag 23654165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 46717033 - 46717093
Alignment:
Q  9 gaaaagaagaaaggagtgacggctagggtttgagaaggagagaagaggaagagataaaggc 69  Q
    ||||||||||||||||||||| ||||  ||||||||||||||||||| |||||| ||||||    
T  46717033 gaaaagaagaaaggagtgacgactagaatttgagaaggagagaagagaaagagaaaaaggc 46717093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 478161 - 478204
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  478161 aagaagaaaggggtgacggctagggtttgagaaggagagaagag 478204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 24825599 - 24825559
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaa 52  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  24825599 aagaagaaaggagtgacggctagggtttgagaaagagagaa 24825559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 22757062 - 22757019
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    ||||||||| | ||||||||||||||||||||||||||||||||    
T  22757062 aagaagaaaagggtgacggctagggtttgagaaggagagaagag 22757019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 7084168 - 7084126
Alignment:
Q  12 aagaagaaaggag-tgacggctagggtttgagaaggagagaag 53  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  7084168 aagaagaaaggaggtgacggctagggtttgagaaggagagaag 7084126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 25658132 - 25658090
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaaga 54  Q
    ||||||||| | |||||||||||||||||||||||||||||||    
T  25658132 aagaagaaaagggtgacggctagggtttgagaaggagagaaga 25658090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 27394792 - 27394750
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaaga 54  Q
    ||||||||||| ||||||||||||||||||||||| |||||||    
T  27394792 aagaagaaaggggtgacggctagggtttgagaaggggagaaga 27394750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 43493415 - 43493460
Alignment:
Q  10 aaaagaagaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    ||||||||||| | ||||||||| ||||||||||||||||||||||    
T  43493415 aaaagaagaaatgggtgacggctggggtttgagaaggagagaagag 43493460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 29922802 - 29922762
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaa 52  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  29922802 aagaagaaaggggtgacggctagggtttgagaagaagagaa 29922762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 20887921 - 20887964
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    ||||||||| | |||||||||||||||| |||||||||||||||    
T  20887921 aagaagaaaagggtgacggctagggttttagaaggagagaagag 20887964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 30201988 - 30201950
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagag 50  Q
    |||||||| || |||||||||||||||||||||||||||    
T  30201988 aagaagaagggggtgacggctagggtttgagaaggagag 30201950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 8712495 - 8712454
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaag 53  Q
    ||||||||| | ||||||||||||||||| ||||||||||||    
T  8712495 aagaagaaaagggtgacggctagggtttgggaaggagagaag 8712454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 19745360 - 19745331
Alignment:
Q  26 gacggctagggtttgagaaggagagaagag 55  Q
    ||||||||||||||||||||||||||||||    
T  19745360 gacggctagggtttgagaaggagagaagag 19745331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Original strand, 19794446 - 19794475
Alignment:
Q  26 gacggctagggtttgagaaggagagaagag 55  Q
    ||||||||||||||||||||||||||||||    
T  19794446 gacggctagggtttgagaaggagagaagag 19794475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 26742617 - 26742662
Alignment:
Q  10 aaaagaagaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    ||||||||||||| ||||| ||||||||||  ||||||||||||||    
T  26742617 aaaagaagaaaggggtgactgctagggtttaggaaggagagaagag 26742662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 21603419 - 21603377
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaaga 54  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  21603419 aagaagaaaggggtgacggctagggtttgagaaggagagaaga 21603377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 10574348 - 10574303
Alignment:
Q  10 aaaagaagaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||    
T  10574348 aaaagaagaaaggggtgacggatagggtttgagaaggagagaagag 10574303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 6667360 - 6667318
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  6667360 aagaagaaagg-gtgacggctagggtttgagaaggagagaagag 6667318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 21990628 - 21990589
Alignment:
Q  16 agaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  21990628 agaaaggggtgacggctagggtttgagaaggagagaagag 21990589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 40761566 - 40761520
Alignment:
Q  9 gaaaagaagaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    |||||||||||||| | ||||||||||||||| ||||||||||||||    
T  40761566 gaaaagaagaaaggggcgacggctagggtttgggaaggagagaagag 40761520  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 9785282 - 9785242
Alignment:
Q  13 agaagaaaggagtgacggctagggtttgagaaggagagaag 53  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  9785282 agaagaaagaggtgacggctagggtttgagaaggagagaag 9785242  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 46026208 - 46026240
Alignment:
Q  23 agtgacggctagggtttgagaaggagagaagag 55  Q
    |||||||||||||||||||||||||||||||||    
T  46026208 agtgacggctagggtttgagaaggagagaagag 46026240  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 11832983 - 11832940
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    ||||||||||   |||||||||||||||||||||||||||||||    
T  11832983 aagaagaaagagatgacggctagggtttgagaaggagagaagag 11832940  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 21954974 - 21955017
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    ||||||||||||  |||| |||||||||||||||||||||||||    
T  21954974 aagaagaaaggaccgacgactagggtttgagaaggagagaagag 21955017  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 45457710 - 45457755
Alignment:
Q  10 aaaagaagaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    ||||||||||||| |||||  |||||||||||||||||| ||||||    
T  45457710 aaaagaagaaaggggtgacaactagggtttgagaaggagggaagag 45457755  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 30992953 - 30993008
Alignment:
Q  9 gaaaagaagaaaggagtgacggctagggttt--gagaaggagagaagaggaagaga 62  Q
    ||||||||||||| |||||| | ||||||||  |||||||||||||||| ||||||    
T  30992953 gaaaagaagaaagaagtgacaggtagggtttgagagaaggagagaagagaaagaga 30993008  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 41287919 - 41287879
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaa 52  Q
    ||||||||| | ||||||| |||||||||||||||||||||    
T  41287919 aagaagaaatgggtgacggatagggtttgagaaggagagaa 41287879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 43807280 - 43807316
Alignment:
Q  9 gaaaagaagaaaggagtgacggctagggtttgagaag 45  Q
    |||||||||||| |||||| |||||||||||||||||    
T  43807280 gaaaagaagaaaagagtgatggctagggtttgagaag 43807316  T

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Target: scaffold0722 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 5656 - 5716
Alignment:
Q  9 gaaaagaagaaaggagtgacggctagggtttgagaaggagagaagaggaagagataaaggc 69  Q
    ||||||||||||| ||||| |||||  ||||||||| |||||||||| |||||| ||||||    
T  5656 gaaaagaagaaagaagtgatggctaaagtttgagaatgagagaagagaaagagaaaaaggc 5716  T

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Target: scaffold0056 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 74137 - 74095
Alignment:
Q  10 aaaagaagaaaggagtgacggctagggtttgagaaggagagaa 52  Q
    |||| |||||| | |||||||||||||||||||||||||||||    
T  74137 aaaaaaagaaaagggtgacggctagggtttgagaaggagagaa 74095  T

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Target: scaffold1379 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 1240 - 1285
Alignment:
Q  10 aaaagaagaaaggagtgacggctagggtttgagaaggagagaagag 55  Q
    ||||||||||||| | |||||||||||||||||| ||| |||||||    
T  1240 aaaagaagaaaggggcgacggctagggtttgagatggatagaagag 1285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 2871 - 2831
Alignment:
Q  12 aagaagaaaggagtgacggctagggtttgagaaggagagaa 52  Q
    ||||||||||| |||||| ||||||||||||||| ||||||    
T  2871 aagaagaaaggggtgacgactagggtttgagaagaagagaa 2831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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