View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0942_low_48 (Length: 411)
Name: NF0942_low_48
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_48 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 171 - 411
Target Start/End: Original strand, 43144056 - 43144300
Alignment:
| Q |
171 |
attattctttcaatagaattgttttattaggaggatgactatttaataataattttaccaaagaataaataaaacatgcaacgtgaaattagtgtatgaa |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43144056 |
attattctttcaatagaattgttttattaggaggatgactatttaataataattttaccaaagaataaataaaacatgcaacgagaaattagtgtatgaa |
43144155 |
T |
|
| Q |
271 |
acgagacttgcttgcatat----atatacccgttgttttcttttgacgcgaatatatatgaactgagaatatttaattaatcatagtgaaattatgaaca |
366 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
43144156 |
atgagacttgcttgcatatatatatatacccgttgttttcttttgacgcgaatatatatgaactgagaatatttaattgatcatagtgaaattatgaaca |
43144255 |
T |
|
| Q |
367 |
ttgtcaacaaaataatagtagtaaacttatgaatagttggactca |
411 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43144256 |
ttgtcaacaaaataatagtagtaaaattatgaatagttggactca |
43144300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 5e-38; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 13471239 - 13471347
Alignment:
| Q |
30 |
aatagttggttagaaacggttggtaagataccaaaactgatagaactaagtttaagtgaatgtggcctttctgatcattttatccattccttgagtcaat |
129 |
Q |
| |
|
||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13471239 |
aatagttggttggaaacagttggtaagctaccaaaactgatagaactaagtttaagaaattgtggcctttctgatcattttgtccattccttgagtcaat |
13471338 |
T |
|
| Q |
130 |
ccaagttca |
138 |
Q |
| |
|
||||||||| |
|
|
| T |
13471339 |
ccaagttca |
13471347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 14016903 - 14016789
Alignment:
| Q |
30 |
aatagttggttagaaacggttggtaagataccaaaactgatagaactaagtttaagtgaatgtggcctttctgatcattttatccattccttgagtcaat |
129 |
Q |
| |
|
||||||||||| ||| |||||||||| |||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14016903 |
aatagttggttgcaaatggttggtaagttaccaaaactgagagaactaagtttaagagattgtggcctttctgatcattttatccattcattgagtcaat |
14016804 |
T |
|
| Q |
130 |
ccaagttcagctttt |
144 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
14016803 |
ccaagttcaactttt |
14016789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 13861222 - 13861336
Alignment:
| Q |
30 |
aatagttggttagaaacggttggtaagataccaaaactgatagaactaagtttaagtgaatgtggcctttctgatcattttatccattccttgagtcaat |
129 |
Q |
| |
|
|||||||||||| ||| |||||||||| |||||||||| | ||||||||||||||| | |||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
13861222 |
aatagttggttaaaaatggttggtaagttaccaaaactaagagaactaagtttaagaaattgtgacctttctgatcattttatccattcattgagtcaat |
13861321 |
T |
|
| Q |
130 |
ccaagttcagctttt |
144 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
13861322 |
ccaagttcaactttt |
13861336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 14112299 - 14112185
Alignment:
| Q |
30 |
aatagttggttagaaacggttggtaagataccaaaactgatagaactaagtttaagtgaatgtggcctttctgatcattttatccattccttgagtcaat |
129 |
Q |
| |
|
||||||||||| ||| |||||||||| |||||||||| | ||||||||||||||| | |||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
14112299 |
aatagttggtttcaaatggttggtaagttaccaaaactaagagaactaagtttaagaaattgtgacctttctgatcattttatccattcattgagtcaat |
14112200 |
T |
|
| Q |
130 |
ccaagttcagctttt |
144 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
14112199 |
ccaagttcaactttt |
14112185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 13942887 - 13942773
Alignment:
| Q |
30 |
aatagttggttagaaacggttggtaagataccaaaactgatagaactaagtttaagtgaatgtggcctttctgatcattttatccattccttgagtcaat |
129 |
Q |
| |
|
||||||||||| ||| |||||||||| ||||||| || | ||||||||||||||| | |||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
13942887 |
aatagttggttgaaaatggttggtaagttaccaaatctaagagaactaagtttaagatattgtgacctttctgatcattttatccattcattgagtcaat |
13942788 |
T |
|
| Q |
130 |
ccaagttcagctttt |
144 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
13942787 |
ccaagttcaactttt |
13942773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 14026847 - 14026750
Alignment:
| Q |
47 |
ggttggtaagataccaaaactgatagaactaagtttaagtgaatgtggcctttctgatcattttatccattccttgagtcaatccaagttcagctttt |
144 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
14026847 |
ggttggtaagttaccaaaactgagagaactaagtttacaaaattgtggcctttctgatcattttatccattcattgagtcaatccaagttcaactttt |
14026750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 14086490 - 14086376
Alignment:
| Q |
30 |
aatagttggttagaaacggttggtaagataccaaaactgatagaactaagtttaagtgaatgtggcctttctgatcattttatccattccttgagtcaat |
129 |
Q |
| |
|
||||||||||| ||| |||||||||| || ||||||| | ||||||||||||||| | |||| ||||||| ||||||| ||||||||| ||||||||| |
|
|
| T |
14086490 |
aatagttggtttcaaatggttggtaagttaacaaaactaagagaactaagtttaagaaattgtgacctttcttatcatttcatccattccctgagtcaat |
14086391 |
T |
|
| Q |
130 |
ccaagttcagctttt |
144 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
14086390 |
ccaagttcaactttt |
14086376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 13891246 - 13891354
Alignment:
| Q |
30 |
aatagttggttagaaacggttggtaagataccaaaactgatagaacta-agtt--taagtgaatgtggcctttctgatcattttatccattccttgagtc |
126 |
Q |
| |
|
||||||||||| ||| |||||||||| ||| |||||||| ||||||| |||| ||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13891246 |
aatagttggttgcaaatggttggtaagctactaaaactgagagaactagagttaataagt---tgtggcctttctgatcattttatccattctttgagta |
13891342 |
T |
|
| Q |
127 |
aatccaagttca |
138 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
13891343 |
aatcgaagttca |
13891354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 14048996 - 14048917
Alignment:
| Q |
30 |
aatagttggttagaaacggttggtaagataccaaaactgatagaactaagtttaagtgaatgtggcctttctgatcattt |
109 |
Q |
| |
|
||||||| ||| |||| |||||||||| |||||||| || |||||||| ||||| || |||| ||||||||||||||| |
|
|
| T |
14048996 |
aatagtttgttggaaatggttggtaagctaccaaaattgggagaactaaatttaacagattgtgacctttctgatcattt |
14048917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 13873530 - 13873583
Alignment:
| Q |
30 |
aatagttggttagaaacggttggtaagataccaaaactgatagaactaagttta |
83 |
Q |
| |
|
||||||||||| || |||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
13873530 |
aatagttggttgcaattggttggtaagctaccaaaactgaaagaactaagttta |
13873583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University