View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0942_low_55 (Length: 381)
Name: NF0942_low_55
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_55 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 67 - 287
Target Start/End: Complemental strand, 52809682 - 52809462
Alignment:
| Q |
67 |
cagaaaagaagttcaatgagtatattctatcaaattccacagtatgttctgattggtgcttcagaggttttcatgtatgtgggtcaattggagttcttta |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52809682 |
cagaaaagaagttcaatgagtatattctatcaaattccacagtatgttctgattggtgcttcagaggttttcatgtatgtgggtcaattggagttcttta |
52809583 |
T |
|
| Q |
167 |
atggtcaagcaccagatggaataaaaagttttgggagttcactttgtatggcttcaatttctcttggaaactatgtgagtagcatgcttgttcacgtggt |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52809582 |
atggtcaagcaccagatggaataaaaagttttgggagttcactttgtatggcttcaatttctcttggaaactatgtgagtagcatgcttgttcacgtggt |
52809483 |
T |
|
| Q |
267 |
catgaaaatcactgcaagagg |
287 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
52809482 |
catgaaaatcactgcaagagg |
52809462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 83 - 252
Target Start/End: Original strand, 397759 - 397928
Alignment:
| Q |
83 |
tgagtatattctatcaaattccacagtatgttctgattggtgcttcagaggttttcatgtatgtgggtcaattggagttctttaatggtcaagcaccaga |
182 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||||| || |
|
|
| T |
397759 |
tgagtatattctgtcaaattccacagtatgttcttgttggtgcttcagaagtttttatgtatgtgggtcagttggagttcttcaatggtcaagcacctga |
397858 |
T |
|
| Q |
183 |
tggaataaaaagttttgggagttcactttgtatggcttcaatttctcttggaaactatgtgagtagcatg |
252 |
Q |
| |
|
||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| || |||||| |
|
|
| T |
397859 |
tggcataaaaagctttggaagttcactttgtatggcatcaatttctcttggaaactatgttagcagcatg |
397928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 83 - 252
Target Start/End: Complemental strand, 3803025 - 3802856
Alignment:
| Q |
83 |
tgagtatattctatcaaattccacagtatgttctgattggtgcttcagaggttttcatgtatgtgggtcaattggagttctttaatggtcaagcaccaga |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||| ||||| ||||||||||||| ||||||||||| ||||||||||| || || |
|
|
| T |
3803025 |
tgagtatattctatcaaattccacagtatgttcttgttggggcttcagaagtttttgtgtatgtgggtcagttggagttcttcaatggtcaagccccgga |
3802926 |
T |
|
| Q |
183 |
tggaataaaaagttttgggagttcactttgtatggcttcaatttctcttggaaactatgtgagtagcatg |
252 |
Q |
| |
|
||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
3802925 |
tggcataaaaagctttggaagttcactttgtatggcttcaatttctcttggaaactatgttagcagcatg |
3802856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 258
Target Start/End: Original strand, 2745785 - 2745916
Alignment:
| Q |
127 |
tcagaggttttcatgtatgtgggtcaattggagttctttaatggtcaagcaccagatggaataaaaagttttgggagttcactttgtatggcttcaattt |
226 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| || ||| || ||||| |||||| | ||||| ||||| ||| ||||||||||| ||||||| | |
|
|
| T |
2745785 |
tcagaagttttcatgtatgttggtcaattggagtttttcaattcacaggcacctgatggattgaaaagctttggaagtgcactttgtatgacttcaatat |
2745884 |
T |
|
| Q |
227 |
ctcttggaaactatgtgagtagcatgcttgtt |
258 |
Q |
| |
|
| | ||||||||||| |||||| |||||||| |
|
|
| T |
2745885 |
cattaggaaactatgttagtagcttgcttgtt |
2745916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University