View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_low_56 (Length: 379)
Name: NF0942_low_56
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 33 - 364
Target Start/End: Original strand, 9812610 - 9812954
Alignment:
| Q |
33 |
caaaacaacacatgctaccttcatgcttgccattgtttttcttaaaataaa-tgtttaaagtgaaatgtgagtttgttatgggttgagttt--------g |
123 |
Q |
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| T |
9812610 |
caaaacaacacatgctatcttcatgtttgccattgtttttcttaaaataaaatgtgtagagaaaaatgtgattttgttatgggttgagtttcttctctag |
9812709 |
T |
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| Q |
124 |
ttttcttggtttgtt-ggtgagtgtaatgtgttaggg-ttagggtttatatagaaaattagagatggaatttagaaaaggttggaaaatgagttcctttc |
221 |
Q |
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| T |
9812710 |
ttctcttggtttgtttggtgagtgtaatgtgttaggggttagtgtttatatacaaaattggagatggaatttagaaaaggttggaaaatgagttcctttc |
9812809 |
T |
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| Q |
222 |
gagaacatgcacataggctatgtcaggatttggtgatagttgtgggttg--tatattaaatgatgtatggtgcatgctccataattattggccacttgtc |
319 |
Q |
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| T |
9812810 |
cagaacatgcacataggctatgtcaggatttggtggtagttgtgggttgtatatattaaatgatgtatggtgcatgctccataattattggccacttgtc |
9812909 |
T |
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| Q |
320 |
tcaatatcattcgaattttatttaatactatgtctgctgttagat |
364 |
Q |
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| T |
9812910 |
tcaatatcgttcgatttttatttaatactacgtctgctgttagat |
9812954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 9831967 - 9831917
Alignment:
| Q |
33 |
caaaacaacacatgctaccttcatgcttgccattgtttttcttaaaataaa |
83 |
Q |
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| T |
9831967 |
caaaacaacacatgctaccttcatgcttgccatttttttccttaaaataaa |
9831917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 9786708 - 9786750
Alignment:
| Q |
33 |
caaaacaacacatgctaccttcatgcttgccattgtttttctt |
75 |
Q |
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| T |
9786708 |
caaaagaacacatgctaccttcatgcttgccattatatttctt |
9786750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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