View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_low_60 (Length: 367)
Name: NF0942_low_60
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_60 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 31 - 357
Target Start/End: Original strand, 40671140 - 40671466
Alignment:
| Q |
31 |
atttatatttcataggtttcaagaaggaagacttgcttgaaggatt-gttgaaatctgcctcagaaataaaagtaacttcaagaaaagtaattgcattgt |
129 |
Q |
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| T |
40671140 |
atttatatttcataggtttcaagaaggaagacttgcttgaaggatttgttgaaatctgcctcagaaataaaagtaacttcaagaaaagtaattgcattgt |
40671239 |
T |
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| Q |
130 |
catttataccctaaatattttcttattttaacgttttgtaccttcactatcatgaagaatatatatatacttttgatagagttaannnnnnngagtttgt |
229 |
Q |
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| T |
40671240 |
catttataccctaaatattttcttattttaacgttttgtaccttcactatcatgaagaatatatatatacttttgatagagttaa-ttttttgagtttgt |
40671338 |
T |
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| Q |
230 |
tggaatttgaatttgttaggttggatggaatttgatttgcattcatcattttatatggagtggtgttgatgtgataaatggtggggtcacaggttaggac |
329 |
Q |
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| T |
40671339 |
tggaatttgaatttgttaggttggatggaatttgatttgcattcatcattttatatggagtggtgttgatgtgataaatggtggggtcacaggttaggac |
40671438 |
T |
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| Q |
330 |
aagttgagagtgctaggaagtacctttg |
357 |
Q |
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| T |
40671439 |
aagttgagagtgctaggaagtacctttg |
40671466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 17758521 - 17758567
Alignment:
| Q |
47 |
tttcaagaaggaagacttgcttgaaggattgttgaaatctgcctcag |
93 |
Q |
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| T |
17758521 |
tttcaagaagaaagacttgctagaagggttgttgaaatctgcctcag |
17758567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 357
Target Start/End: Complemental strand, 32333447 - 32333397
Alignment:
| Q |
307 |
atggtggggtcacaggttaggacaagttgagagtgctaggaagtacctttg |
357 |
Q |
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||||||| || ||||||||||||||||||||| |||||||||| ||||||| |
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| T |
32333447 |
atggtggtgttacaggttaggacaagttgagaatgctaggaagcacctttg |
32333397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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