View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_low_65 (Length: 361)
Name: NF0942_low_65
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_65 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 41703523 - 41703875
Alignment:
| Q |
1 |
cttcactcttgatcttcaatcctaattatgcataggaggcgttccacaatatccctcatactaggcctttcaactttcttctccctaagacaatcatgtg |
100 |
Q |
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| T |
41703523 |
cttcactcttgatcttcaatcctaattatgcataggaggcgttccacaatatccctcatactaggcctttcaactttcttctccctaagacaatcatgtg |
41703622 |
T |
|
| Q |
101 |
caagctcccaaaagagttctatgcttgtgatcaatttactacttaagggttccacagatagaagaagcctttgatcaaccacttgcatgattgcaccatt |
200 |
Q |
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| T |
41703623 |
caagctcccaaaagagttctatgcttgtgatcaatttactacttaagggttccacagatagaagaagcctttgatcaaccacttgcatgattgcaccatt |
41703722 |
T |
|
| Q |
201 |
gcttgcatattgagtcacatgaattactaagttgacatcatcttgatcacgagaaaagtctattgctttctgtgaagtcaagagctctagtaacacaact |
300 |
Q |
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| T |
41703723 |
gcttgcatattgactcacatgaattactaagttgacatcatcttcatcacgagaaaagtctattgctttctgtgaagtcaagagctctagtaacacaact |
41703822 |
T |
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| Q |
301 |
ccatagctataaacatcacttttatcggttaattggtagttgcgatattattc |
353 |
Q |
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| T |
41703823 |
ccatagctataaacatcacttttatcggttaattggtagttgcggtagtattc |
41703875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 233 - 344
Target Start/End: Complemental strand, 41814682 - 41814571
Alignment:
| Q |
233 |
tgacatcatcttgatcacgagaaaagtctattgctttctgtgaagtcaagagctctagtaacacaactccatagctataaacatcacttttatcggttaa |
332 |
Q |
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|||||||||| |||||| ||||| | |||| |||||||||| ||||||| | |||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
41814682 |
tgacatcatcatgatcatgagaagaatctactgctttctgtcaagtcaaaaactctagcagcacaactccatagctataaacatcacttttatcggttaa |
41814583 |
T |
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| Q |
333 |
ttggtagttgcg |
344 |
Q |
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||| ||||||| |
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| T |
41814582 |
ctggcagttgcg |
41814571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 324
Target Start/End: Original strand, 44888551 - 44888589
Alignment:
| Q |
286 |
tctagtaacacaactccatagctataaacatcactttta |
324 |
Q |
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||||| || |||||||||||||||||||||||||||||| |
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| T |
44888551 |
tctagcaagacaactccatagctataaacatcactttta |
44888589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 335
Target Start/End: Complemental strand, 9118837 - 9118800
Alignment:
| Q |
298 |
actccatagctataaacatcacttttatcggttaattg |
335 |
Q |
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|||||| ||||||||||||||||||| ||||||||||| |
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| T |
9118837 |
actccaaagctataaacatcacttttctcggttaattg |
9118800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 334
Target Start/End: Original strand, 9170441 - 9170477
Alignment:
| Q |
298 |
actccatagctataaacatcacttttatcggttaatt |
334 |
Q |
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|||||| ||||||||||||||||||| |||||||||| |
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| T |
9170441 |
actccaaagctataaacatcacttttttcggttaatt |
9170477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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