View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_low_70 (Length: 359)
Name: NF0942_low_70
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_70 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 35789257 - 35788888
Alignment:
| Q |
1 |
cctggatatcatcatggaactaatgagtatcagatgaatagtggaagaagaagaagaaatggaggaagagga------------tggaggggaaattatc |
88 |
Q |
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| T |
35789257 |
cctggatatgatcatggaactaatgagtatcagatgaatagtggaagaagaagaagaaatggaggaagaggaggagggagaggatggaggggaaattatc |
35789158 |
T |
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| Q |
89 |
cttatgtcgacaaggtagctactccttgtgcatggtgaatgaatatcaaatgccttggactgcatgaaagctaggacacgtatgaagcttaggatataag |
188 |
Q |
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| T |
35789157 |
cttatgtcgacaaggtagctactccttgtgcatggtgaatgaatatcaaatgccttggactacaagaaagctaggacacgtatgaagcttaggatataag |
35789058 |
T |
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| Q |
189 |
ttatgttatctaggta---ttatatatgtgatgttatattagatacctttgtggtgatcgatgatacaatgtatatattagttctgctattattgaaata |
285 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35789057 |
ttatgttatctaggtattattatatatgtgatgttatattagatacctttgtggtgatcgatgatacaatgtatatattagttatgctattattgaaata |
35788958 |
T |
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| Q |
286 |
tgaatatgcaactacaattaaatgatgctatattg-tttgattcttgtcttcttgattatctctgctcct |
354 |
Q |
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| T |
35788957 |
tgaatatgcaactacaattaaatgatgctacattgttttgattcttatcttcttgattatctttgctcct |
35788888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 262 - 346
Target Start/End: Complemental strand, 35798529 - 35798445
Alignment:
| Q |
262 |
attagttctgctattattgaaatatgaatatgcaactacaattaaatgatgctatattgtttgattcttgtcttcttgattatct |
346 |
Q |
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| T |
35798529 |
attagtactgatattattgaaatatgaatatgaaactacaattaaatgatgttatattgtttgattcttgtcttcttgattatct |
35798445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 35765929 - 35765781
Alignment:
| Q |
1 |
cctggatatcatcatggaactaatgagtatcagatgaatagtggaagaagaagaagaaatggaggaagaggatggaggggaaattatccttatgtcgaca |
100 |
Q |
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| T |
35765929 |
cctggatatcatcatggcactagtgactatcagatgaatagaggaagaggaagagg---tggaggaag------gaggggaaattttgcttatgcagaca |
35765839 |
T |
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| Q |
101 |
aggtagctactccttgtgcatggtgaatgaatatcaaatgccttggactgcatgaaag |
158 |
Q |
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| T |
35765838 |
aggtaactactcctagtgcatggtaaatgaagatcagatgctttggactgcaagaaag |
35765781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 35798885 - 35798817
Alignment:
| Q |
1 |
cctggatatcatcatggaactaatgagtatcagatgaatagtggaagaagaagaagaaatggaggaagagga |
72 |
Q |
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| T |
35798885 |
cctggatatcatcatggcactaatgagtatcagatgaatagaggaagaaga---agaaatggaggaagagga |
35798817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 35760373 - 35760281
Alignment:
| Q |
62 |
gaggaagaggatggaggggaaattatccttatgtcgacaaggtagctactccttgtgcatggtgaatgaatatcaaatgccttggactgcatg |
154 |
Q |
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| T |
35760373 |
gaggaggaggaaggaggggaaatttttcttatgtggaaaaggtagctactcctggtgcatggtaaatgaagatcaagggccttggactgcatg |
35760281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 35798680 - 35798635
Alignment:
| Q |
179 |
aggatataagttatgttatctaggtattatatatgtgatgttatat |
224 |
Q |
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| T |
35798680 |
aggatataagttatgttttctaggtattatatatgtgatgttatat |
35798635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 334
Target Start/End: Complemental strand, 35760078 - 35760005
Alignment:
| Q |
262 |
attagttctgctattattgaaatatgaa-tatgcaactacaattaaatgatgctatattgtttgattcttgtct |
334 |
Q |
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|||||| ||| |||||||||||||| || ||||||| ||||||||||||| |||| | ||||| |||||||||| |
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| T |
35760078 |
attagtactggtattattgaaatataaaatatgcaattacaattaaatgaagctaaactgttttattcttgtct |
35760005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 35760439 - 35760394
Alignment:
| Q |
11 |
atcatggaactaatgagtatcagatgaatagtggaagaagaagaag |
56 |
Q |
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| T |
35760439 |
atcatggtactaatgaatatcagatgaatagaggaagaagaagaag |
35760394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 152
Target Start/End: Complemental strand, 35785347 - 35785293
Alignment:
| Q |
98 |
acaaggtagctactccttgtgcatggtgaatgaatatcaaatgccttggactgca |
152 |
Q |
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||||||||||||||||| |||||||| |||||| ||||||| ||||| |||||| |
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| T |
35785347 |
acaaggtagctactcctactgcatggtaaatgaagatcaaataccttgtactgca |
35785293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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