View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_low_73 (Length: 348)
Name: NF0942_low_73
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_73 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 160 - 338
Target Start/End: Original strand, 16727884 - 16728062
Alignment:
| Q |
160 |
cttattatataaattatttgatatgaaataacaatttaactatatataacagaacattccggagtcattaacagcaagattattaaacttggagatgttg |
259 |
Q |
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| T |
16727884 |
cttattatataaattatttgatatgaaataacaatttaactatatataacagaacattccggagtcattaacagcaagattattaaacttggaaatgttg |
16727983 |
T |
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| Q |
260 |
gacgtgcactccaaccagcttagatccctacccaattccattggttgtctctctaaactcaaagttttgaatgtctctg |
338 |
Q |
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| T |
16727984 |
gacgtgcactccaaccagcttagatccctacccaattccattggttgtctctctaaactcaaagttttgaatgtctctg |
16728062 |
T |
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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 336
Target Start/End: Complemental strand, 52729482 - 52729354
Alignment:
| Q |
208 |
acagaacattccggagtcattaacagcaagattattaaacttggagatgttggacgtgcactccaaccagcttagatccctacccaattccattggttgt |
307 |
Q |
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| T |
52729482 |
acagaatattccggagtcgttaacagcaagactgctgaacatggtagtgttggacgtgcactcaaaccagcttaggtctctcccaaactccattggttgc |
52729383 |
T |
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| Q |
308 |
ctctctaaactcaaagttttgaatgtctc |
336 |
Q |
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| T |
52729382 |
ctctctaggctcaagcttttgaatgtctc |
52729354 |
T |
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