View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0942_low_76 (Length: 340)

Name: NF0942_low_76
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0942_low_76
NF0942_low_76
[»] chr2 (10 HSPs)
chr2 (40-330)||(45166210-45166496)
chr2 (254-304)||(18570979-18571029)
chr2 (254-304)||(31026702-31026752)
chr2 (252-300)||(22131254-22131302)
chr2 (252-305)||(4229408-4229461)
chr2 (252-289)||(14373427-14373464)
chr2 (254-299)||(45000848-45000893)
chr2 (260-304)||(12748691-12748735)
chr2 (254-290)||(37402086-37402122)
chr2 (253-305)||(44605140-44605192)
[»] chr7 (8 HSPs)
chr7 (254-304)||(2525846-2525896)
chr7 (252-304)||(36314627-36314679)
chr7 (256-304)||(38134410-38134458)
chr7 (254-304)||(20427637-20427687)
chr7 (254-303)||(24146824-24146873)
chr7 (255-314)||(16827639-16827696)
chr7 (247-303)||(17851439-17851495)
chr7 (260-304)||(44172898-44172942)
[»] chr4 (13 HSPs)
chr4 (254-304)||(56049884-56049933)
chr4 (252-304)||(18513241-18513293)
chr4 (254-305)||(25390888-25390939)
chr4 (257-304)||(14465299-14465346)
chr4 (251-290)||(40224497-40224536)
chr4 (254-300)||(3568852-3568898)
chr4 (252-302)||(11110212-11110262)
chr4 (53-114)||(4273786-4273847)
chr4 (254-303)||(33950144-33950193)
chr4 (251-304)||(43299970-43300023)
chr4 (251-304)||(43300623-43300676)
chr4 (260-304)||(5654599-5654643)
chr4 (256-304)||(24846782-24846830)
[»] chr3 (4 HSPs)
chr3 (254-304)||(20691326-20691376)
chr3 (254-304)||(40150573-40150623)
chr3 (251-300)||(23271993-23272042)
chr3 (254-290)||(27513664-27513700)
[»] chr1 (8 HSPs)
chr1 (254-304)||(19637775-19637825)
chr1 (254-303)||(31667433-31667482)
chr1 (275-314)||(1314203-1314242)
chr1 (252-303)||(30847720-30847771)
chr1 (53-114)||(2809884-2809945)
chr1 (251-314)||(11412767-11412827)
chr1 (251-303)||(1864879-1864931)
chr1 (243-303)||(38075961-38076021)
[»] chr5 (7 HSPs)
chr5 (252-304)||(14818303-14818354)
chr5 (254-305)||(17925174-17925225)
chr5 (253-304)||(19737483-19737534)
chr5 (194-222)||(36577616-36577644)
chr5 (252-304)||(38749563-38749615)
chr5 (254-314)||(40211953-40212013)
chr5 (252-300)||(43208274-43208322)
[»] chr6 (5 HSPs)
chr6 (254-301)||(9024178-9024225)
chr6 (254-303)||(9617442-9617491)
chr6 (254-302)||(9629392-9629440)
chr6 (256-300)||(10157995-10158039)
chr6 (254-290)||(32980979-32981015)
[»] scaffold0022 (1 HSPs)
scaffold0022 (254-304)||(99900-99950)
[»] scaffold0011 (1 HSPs)
scaffold0011 (254-304)||(240023-240073)
[»] chr8 (6 HSPs)
chr8 (254-304)||(12985399-12985449)
chr8 (255-304)||(3508059-3508108)
chr8 (263-303)||(29198490-29198530)
chr8 (255-303)||(31236580-31236628)
chr8 (254-290)||(31548295-31548331)
chr8 (262-306)||(34201056-34201100)


Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 40 - 330
Target Start/End: Original strand, 45166210 - 45166496
Alignment:
Q  40 aggccacttataacagatgttctacactctctcatccctttggtacccttagagcttggagggtcactcagagttacagaaccaatcggctcagaaaatc 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45166210 aggccacttataacagatgttctacactctctcatccctttggtacccttagagcttggagggtcactcagagttacagaaccaatcggctcagaaaatc 45166309  T
Q  140 ttcaatgatttnnnnnnnnnnnnnngtgttttatatggtagtatttgagccaatgaagcacagacacttcttggattaggcgttgtcccagcatcggaca 239  Q
    |||||||||||              ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  45166310 ttcaatgatttaaaaaaaaaa----gtgttttatatggtagtatttgagccaatgaagcacagacactccttggattaggcgttgtcccagcatcggaca 45166405  T
Q  240 aatatcgatgcccaacaccgacacatatgattacattgaactatgtcatttgctaaaattattattatcggtgtcgcgcatagtatctgtg 330  Q
     |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45166406 catatcgatgcccaacaccgacacatatggttacattgaactatgtcatttgctaaaattattattatcggtgtcgcgcatagtatctgtg 45166496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 18571029 - 18570979
Alignment:
Q  254 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 304  Q
    |||| ||||||||||||||||||||| |||||||||| || ||||||||||    
T  18571029 acactgacacatatgattacattgaattatgtcattttctcaaattattat 18570979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 31026752 - 31026702
Alignment:
Q  254 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 304  Q
    ||||||||| |||||||||||||||| |||||||||| || ||||||||||    
T  31026752 acaccgacatatatgattacattgaattatgtcattttcttaaattattat 31026702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 22131254 - 22131302
Alignment:
Q  252 caacaccgacacatatgattacattgaactatgtcatttgctaaaatta 300  Q
    |||||||||||||| |||||||||||||| ||||||||| || ||||||    
T  22131254 caacaccgacacatgtgattacattgaacaatgtcattttctcaaatta 22131302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 305
Target Start/End: Original strand, 4229408 - 4229461
Alignment:
Q  252 caacaccgacacatatgattacattgaactatgtcatttgctaaaattattatt 305  Q
    ||||| ||||||||||||||||| |||| |||||||||  || |||||||||||    
T  4229408 caacatcgacacatatgattacactgaattatgtcattctcttaaattattatt 4229461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 289
Target Start/End: Original strand, 14373427 - 14373464
Alignment:
Q  252 caacaccgacacatatgattacattgaactatgtcatt 289  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  14373427 caacaccgacacatgtgattacattgaattatgtcatt 14373464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 45000848 - 45000893
Alignment:
Q  254 acaccgacacatatgattacattgaactatgtcatttgctaaaatt 299  Q
    |||||||||||||||||||||||||| | |||||||| || |||||    
T  45000848 acaccgacacatatgattacattgaattgtgtcattttctcaaatt 45000893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 12748735 - 12748691
Alignment:
Q  260 acacatatgattacattgaactatgtcatttgctaaaattattat 304  Q
    |||| |||||||||| ||||||||||||||| || ||||||||||    
T  12748735 acacctatgattacactgaactatgtcattttctcaaattattat 12748691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 37402086 - 37402122
Alignment:
Q  254 acaccgacacatatgattacattgaactatgtcattt 290  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  37402086 acactgacacatatgattacattgaattatgtcattt 37402122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 44605140 - 44605192
Alignment:
Q  253 aacaccgacacatatgattacattgaactatgtcatttgctaaaattattatt 305  Q
    ||||||||||||| | ||||||||||| ||||| |||| || |||||||||||    
T  44605140 aacaccgacacatgtaattacattgaattatgttattttctcaaattattatt 44605192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 304
Target Start/End: Original strand, 2525846 - 2525896
Alignment:
Q  254 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 304  Q
    ||||||||||||||||||| |||||| ||||||||||||| ||||||||||    
T  2525846 acaccgacacatatgattatattgaattatgtcatttgctcaaattattat 2525896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 36314627 - 36314679
Alignment:
Q  252 caacaccgacacatatgattacattgaactatgtcatttgctaaaattattat 304  Q
    ||||||| |||||||||||||||||||| |||||||||| || ||||||||||    
T  36314627 caacaccaacacatatgattacattgaaatatgtcattttctcaaattattat 36314679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 256 - 304
Target Start/End: Original strand, 38134410 - 38134458
Alignment:
Q  256 accgacacatatgattacattgaactatgtcatttgctaaaattattat 304  Q
    |||||||||||||||||||||||| |||||||||| || ||||||||||    
T  38134410 accgacacatatgattacattgaattatgtcattttctcaaattattat 38134458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 304
Target Start/End: Original strand, 20427637 - 20427687
Alignment:
Q  254 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 304  Q
    ||||||||||||||||||||||| || |||||||| | || ||||||||||    
T  20427637 acaccgacacatatgattacatttaaatatgtcatcttctcaaattattat 20427687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 24146873 - 24146824
Alignment:
Q  254 acaccgacacatatgattacattgaactatgtcatttgctaaaattatta 303  Q
    |||||||||||||| |||| |||||| ||||| |||| ||||||||||||    
T  24146873 acaccgacacatataattatattgaattatgtgattttctaaaattatta 24146824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 16827696 - 16827639
Alignment:
Q  255 caccgacacatatgattacattgaactatgtcatttgctaaaattattattatcggtgtc 314  Q
    |||| |||||| |||||||||||||  |||||||||||| |||||||  |||||||||||    
T  16827696 caccaacacatgtgattacattgaatcatgtcatttgctcaaattat--ttatcggtgtc 16827639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 17851495 - 17851439
Alignment:
Q  247 atgcccaacaccgacacatatgattacattgaactatgtcatttgctaaaattatta 303  Q
    ||||| ||||| ||||||||| |||||| |||| ||||| |||| ||||||||||||    
T  17851495 atgcctaacacagacacatataattacactgaattatgtgattttctaaaattatta 17851439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 44172898 - 44172942
Alignment:
Q  260 acacatatgattacattgaactatgtcatttgctaaaattattat 304  Q
    |||||| ||||||||||||| |||||||||| || ||||||||||    
T  44172898 acacatgtgattacattgaattatgtcattttctcaaattattat 44172942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 56049933 - 56049884
Alignment:
Q  254 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 304  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  56049933 acaccgacacatatgattacattgaactatgtcattt-ctcaaattattat 56049884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 18513241 - 18513293
Alignment:
Q  252 caacaccgacacatatgattacattgaactatgtcatttgctaaaattattat 304  Q
    |||||| ||||||||||||||||||||| |||||||||| || ||||||||||    
T  18513241 caacactgacacatatgattacattgaattatgtcattttctcaaattattat 18513293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 25390888 - 25390939
Alignment:
Q  254 acaccgacacatatgattacattgaactatgtcatttgctaaaattattatt 305  Q
    ||||||||||||||| ||| |||||| |||||||||| ||||||||||||||    
T  25390888 acaccgacacatatggttatattgaattatgtcattttctaaaattattatt 25390939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 304
Target Start/End: Original strand, 14465299 - 14465346
Alignment:
Q  257 ccgacacatatgattacattgaactatgtcatttgctaaaattattat 304  Q
    |||||||||||||||| |||||| |||||||||| || ||||||||||    
T  14465299 ccgacacatatgattaaattgaattatgtcattttctcaaattattat 14465346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 290
Target Start/End: Original strand, 40224497 - 40224536
Alignment:
Q  251 ccaacaccgacacatatgattacattgaactatgtcattt 290  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  40224497 ccaacaccgacacatatgattacattaaattatgtcattt 40224536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 3568852 - 3568898
Alignment:
Q  254 acaccgacacatatgattacattgaactatgtcatttgctaaaatta 300  Q
    ||||||||||||||||||  ||||||||||||||||| || ||||||    
T  3568852 acaccgacacatatgatttaattgaactatgtcattttctcaaatta 3568898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 11110262 - 11110212
Alignment:
Q  252 caacaccgacacatatgattacattgaactatgtcatttgctaaaattatt 302  Q
    ||||| |||||||||||||||||| ||| |||||||||| || ||||||||    
T  11110262 caacatcgacacatatgattacatcgaattatgtcattttctcaaattatt 11110212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 4273786 - 4273847
Alignment:
Q  53 cagatgttctacactctctcatccctttggtacccttagagcttggagggtcactcagagtt 114  Q
    |||||||||||||||| ||||||||| | |||||  | |||||||||||  |||||||||||    
T  4273786 cagatgttctacactccctcatccctcttgtacctgttgagcttggaggaacactcagagtt 4273847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 33950193 - 33950144
Alignment:
Q  254 acaccgacacatatgattacattgaactatgtcatttgctaaaattatta 303  Q
    ||||||||||||||||||||||| || ||||| |||| || |||||||||    
T  33950193 acaccgacacatatgattacattaaattatgtgattttctcaaattatta 33950144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 43299970 - 43300023
Alignment:
Q  251 ccaacaccgacacatatgattacattgaactatgtcatttgctaaaattattat 304  Q
    ||||||||| || |||||||||||||||| ||||| |||| || ||||||||||    
T  43299970 ccaacaccggcagatatgattacattgaattatgtaattttctcaaattattat 43300023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 43300676 - 43300623
Alignment:
Q  251 ccaacaccgacacatatgattacattgaactatgtcatttgctaaaattattat 304  Q
    |||||| ||||| |||||||||||||||| ||||| |||| || ||||||||||    
T  43300676 ccaacagcgacaaatatgattacattgaattatgtaattttctcaaattattat 43300623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 5654599 - 5654643
Alignment:
Q  260 acacatatgattacattgaactatgtcatttgctaaaattattat 304  Q
    |||| ||||||||||||||| |||||||||| || ||||||||||    
T  5654599 acacgtatgattacattgaattatgtcattttctcaaattattat 5654643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 304
Target Start/End: Original strand, 24846782 - 24846830
Alignment:
Q  256 accgacacatatgattacattgaactatgtcatttgctaaaattattat 304  Q
    |||| ||||||||| |||| |||| ||||||||||||| ||||||||||    
T  24846782 accgtcacatatgagtacagtgaattatgtcatttgctcaaattattat 24846830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 20691376 - 20691326
Alignment:
Q  254 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 304  Q
    ||||||||||||||||||||| |||| |||||||||| || ||||||||||    
T  20691376 acaccgacacatatgattacactgaattatgtcattttctcaaattattat 20691326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 304
Target Start/End: Original strand, 40150573 - 40150623
Alignment:
Q  254 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 304  Q
    |||||||||||||||||||||||||| ||| |||||| || ||||||||||    
T  40150573 acaccgacacatatgattacattgaattatatcattttctcaaattattat 40150623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 300
Target Start/End: Original strand, 23271993 - 23272042
Alignment:
Q  251 ccaacaccgacacatatgattacattgaactatgtcatttgctaaaatta 300  Q
    |||||||||||||||||||||||||| || ||||||| || || ||||||    
T  23271993 ccaacaccgacacatatgattacattcaattatgtcagtttctcaaatta 23272042  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 27513664 - 27513700
Alignment:
Q  254 acaccgacacatatgattacattgaactatgtcattt 290  Q
    ||||||||||||||||||||||||||  |||||||||    
T  27513664 acaccgacacatatgattacattgaataatgtcattt 27513700  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 19637825 - 19637775
Alignment:
Q  254 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 304  Q
    ||||||||||||||||||||||||||  ||||||||| || ||||||||||    
T  19637825 acaccgacacatatgattacattgaataatgtcattttcttaaattattat 19637775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 31667482 - 31667433
Alignment:
Q  254 acaccgacacatatgattacattgaactatgtcatttgctaaaattatta 303  Q
    |||||||||||| |||||||||| || |||||||||| ||||||||||||    
T  31667482 acaccgacacatgtgattacatttaattatgtcattttctaaaattatta 31667433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 314
Target Start/End: Original strand, 1314203 - 1314242
Alignment:
Q  275 ttgaactatgtcatttgctaaaattattattatcggtgtc 314  Q
    |||||||||||||||| || ||||||||||||||||||||    
T  1314203 ttgaactatgtcatttacttaaattattattatcggtgtc 1314242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 303
Target Start/End: Original strand, 30847720 - 30847771
Alignment:
Q  252 caacaccgacacatatgattacattgaactatgtcatttgctaaaattatta 303  Q
    |||||| ||||||||||||||||||||| ||||||||||  | |||||||||    
T  30847720 caacactgacacatatgattacattgaattatgtcattttttcaaattatta 30847771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 2809884 - 2809945
Alignment:
Q  53 cagatgttctacactctctcatccctttggtacccttagagcttggagggtcactcagagtt 114  Q
    |||||||||||||||| ||||||||| | |||||  | |||||||||||  |||||||||||    
T  2809884 cagatgttctacactccctcatccctcttgtacctgttgagcttggaggaacactcagagtt 2809945  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 314
Target Start/End: Original strand, 11412767 - 11412827
Alignment:
Q  251 ccaacaccgacacatatgattacattgaactatgtcatttgctaaaattattattatcggtgtc 314  Q
    ||||||||||||| |||||| |||||||| |||||||||| || |   ||||||||||||||||    
T  11412767 ccaacaccgacacctatgatcacattgaattatgtcattttctca---tattattatcggtgtc 11412827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 1864879 - 1864931
Alignment:
Q  251 ccaacaccgacacatatgattacattgaactatgtcatttgctaaaattatta 303  Q
    ||||||||||||||||| |||||| |||| ||||| |||| || |||||||||    
T  1864879 ccaacaccgacacatataattacactgaattatgtgattttctcaaattatta 1864931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 303
Target Start/End: Original strand, 38075961 - 38076021
Alignment:
Q  243 atcgatgcccaacaccgacacatatgattacattgaactatgtcatttgctaaaattatta 303  Q
    ||||||| || ||||||||||||||||||||| |||  ||||| |||| || |||||||||    
T  38075961 atcgatgtccgacaccgacacatatgattacactgacttatgtgatttactcaaattatta 38076021  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 14818303 - 14818354
Alignment:
Q  252 caacaccgacacatatgattacattgaactatgtcatttgctaaaattattat 304  Q
    ||||||||||||||||| |||||||||| |||||||||| || ||||||||||    
T  14818303 caacaccgacacatatgtttacattgaattatgtcattt-ctcaaattattat 14818354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 17925174 - 17925225
Alignment:
Q  254 acaccgacacatatgattacattgaactatgtcatttgctaaaattattatt 305  Q
    |||||||||||||| ||||||||||| ||||| |||| || |||||||||||    
T  17925174 acaccgacacatattattacattgaattatgtgattttcttaaattattatt 17925225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 304
Target Start/End: Original strand, 19737483 - 19737534
Alignment:
Q  253 aacaccgacacatatgattacattgaactatgtcatttgctaaaattattat 304  Q
    ||||||||||||||||||| ||||||| ||||| |||| || ||||||||||    
T  19737483 aacaccgacacatatgattgcattgaattatgtaattttctcaaattattat 19737534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 222
Target Start/End: Original strand, 36577616 - 36577644
Alignment:
Q  194 gaagcacagacacttcttggattaggcgt 222  Q
    |||||||||||||||||||||||||||||    
T  36577616 gaagcacagacacttcttggattaggcgt 36577644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 38749563 - 38749615
Alignment:
Q  252 caacaccgacacatatgattacattgaactatgtcatttgctaaaattattat 304  Q
    ||||||| |||||||| ||||||||||| ||||||||||  | ||||||||||    
T  38749563 caacaccaacacatataattacattgaattatgtcattttttcaaattattat 38749615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 314
Target Start/End: Complemental strand, 40212013 - 40211953
Alignment:
Q  254 acaccgacacatatgattacattgaactatgtcatttgctaaaattattattatcggtgtc 314  Q
    ||||||| ||||||||||| |||||| ||||| |||| || || ||||||| |||||||||    
T  40212013 acaccgatacatatgattatattgaattatgtaattttctcaatttattatcatcggtgtc 40211953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 43208274 - 43208322
Alignment:
Q  252 caacaccgacacatatgattacattgaactatgtcatttgctaaaatta 300  Q
    |||||| |||| |||||||||||||||| |||||||||| || ||||||    
T  43208274 caacacagacagatatgattacattgaattatgtcattttctcaaatta 43208322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 301
Target Start/End: Original strand, 9024178 - 9024225
Alignment:
Q  254 acaccgacacatatgattacattgaactatgtcatttgctaaaattat 301  Q
    |||| ||||||||||||||||||||| |||||||||| || |||||||    
T  9024178 acactgacacatatgattacattgaattatgtcattttctcaaattat 9024225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 9617491 - 9617442
Alignment:
Q  254 acaccgacacatatgattacattgaactatgtcatttgctaaaattatta 303  Q
    |||||||||||||| ||||||||||| ||||| |||| || |||||||||    
T  9617491 acaccgacacatataattacattgaattatgtgattttctcaaattatta 9617442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 9629440 - 9629392
Alignment:
Q  254 acaccgacacatatgattacattgaactatgtcatttgctaaaattatt 302  Q
    |||||||||||||| ||||||||||| ||||| |||| || ||||||||    
T  9629440 acaccgacacatataattacattgaattatgtgattttctcaaattatt 9629392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 10158039 - 10157995
Alignment:
Q  256 accgacacatatgattacattgaactatgtcatttgctaaaatta 300  Q
    |||||||||| ||||||||||||| |||||||||| || ||||||    
T  10158039 accgacacatgtgattacattgaattatgtcattttctcaaatta 10157995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 32981015 - 32980979
Alignment:
Q  254 acaccgacacatatgattacattgaactatgtcattt 290  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  32981015 acaccgacacatatgattatattgaattatgtcattt 32980979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 99950 - 99900
Alignment:
Q  254 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 304  Q
    ||||| |||||||| ||||||||||| ||||| |||| |||||||||||||    
T  99950 acaccaacacatataattacattgaattatgttattttctaaaattattat 99900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 304
Target Start/End: Original strand, 240023 - 240073
Alignment:
Q  254 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 304  Q
    |||||||||||||||||||||||||| ||| | |||| || ||||||||||    
T  240023 acaccgacacatatgattacattgaattatattattttctcaaattattat 240073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 12985449 - 12985399
Alignment:
Q  254 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 304  Q
    ||||||||| |||||||||||||||| ||||| |||| || ||||||||||    
T  12985449 acaccgacatatatgattacattgaattatgtgattttctcaaattattat 12985399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 304
Target Start/End: Complemental strand, 3508108 - 3508059
Alignment:
Q  255 caccgacacatatgattacattgaactatgtcatttgctaaaattattat 304  Q
    |||| |||||||||||||||||||| ||||| |||| || ||||||||||    
T  3508108 caccaacacatatgattacattgaattatgttattttctcaaattattat 3508059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 29198490 - 29198530
Alignment:
Q  263 catatgattacattgaactatgtcatttgctaaaattatta 303  Q
    ||||||||||||||||| |||||||||| || |||||||||    
T  29198490 catatgattacattgaattatgtcattttctcaaattatta 29198530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 31236580 - 31236628
Alignment:
Q  255 caccgacacatatgattacattgaactatgtcatttgctaaaattatta 303  Q
    ||||||||||||| ||||||||||| ||||| |||| || |||||||||    
T  31236580 caccgacacatataattacattgaattatgtgattttctcaaattatta 31236628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 31548295 - 31548331
Alignment:
Q  254 acaccgacacatatgattacattgaactatgtcattt 290  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  31548295 acaccgacacatgtgattacattgaattatgtcattt 31548331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 34201056 - 34201100
Alignment:
Q  262 acatatgattacattgaactatgtcatttgctaaaattattatta 306  Q
    |||||| ||||||||||| |||||||||| || ||||||||||||    
T  34201056 acatataattacattgaattatgtcattttctcaaattattatta 34201100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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