View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_low_77 (Length: 339)
Name: NF0942_low_77
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_77 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 6 - 183
Target Start/End: Original strand, 28216069 - 28216246
Alignment:
| Q |
6 |
taaccgtaagattaatctctttaagggattatttatcttctaaacatatgcatcttttttctcattattaaaatttaaactccaattcttcacttatgga |
105 |
Q |
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| T |
28216069 |
taaccgtgagattaatctctttaagggattatttatcttctaaacatatgcatcttttttctcattattaaaatttaaactccaattcttcacttatgga |
28216168 |
T |
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| Q |
106 |
aaacttgtcatatactttccatgttctaggggaactactcactcatcataaggatgagctacctaatgaaaactaaaa |
183 |
Q |
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| T |
28216169 |
aaacttgtcatatactttccatgttctaggggaactactcactcatcataaggatgagctacctaatgaaaaataaaa |
28216246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 174 - 339
Target Start/End: Original strand, 28216260 - 28216425
Alignment:
| Q |
174 |
aaaactaaaatacttaaatgaaatgataagaataatataggagttttctagtatgtaatgtggtaccaaatgctaagattgtaaacatatttataatccc |
273 |
Q |
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| T |
28216260 |
aaaactaaaatactttaatgaaataataagaataatataggagttttctagtatgtaatgtggtaccaaatgctaagattgtaaacatatttataatcct |
28216359 |
T |
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| Q |
274 |
aaggactcctaatttcgtgcatcataataaactttaaacttaagatgtaacaactaaaattgatgc |
339 |
Q |
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| T |
28216360 |
aaggactcctaatttcgtgcatcataataaactttaaacttaagatgtaacaactaaaattgatgc |
28216425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 253
Target Start/End: Complemental strand, 17134360 - 17134314
Alignment:
| Q |
207 |
aatataggagttttctagtatgtaatgtggtaccaaatgctaagatt |
253 |
Q |
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| T |
17134360 |
aatataagagttttctaatatgtaatgtggtgtcaaatgctaagatt |
17134314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 21453277 - 21453239
Alignment:
| Q |
139 |
actactcactcatcataaggatgagctacctaatgaaaa |
177 |
Q |
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| T |
21453277 |
actactcactcatcacaaggatgagctacccaatgaaaa |
21453239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 26774304 - 26774263
Alignment:
| Q |
136 |
ggaactactcactcatcataaggatgagctacctaatgaaaa |
177 |
Q |
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| T |
26774304 |
ggaactactcactcatcataaggatgaactacgtagtgaaaa |
26774263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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