View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_low_78 (Length: 338)
Name: NF0942_low_78
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_78 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 36649953 - 36649695
Alignment:
| Q |
1 |
ttcaaaaatttctactgtatgttctttagatatgattgaagcttaaggaaagatacaagaggttcatatacatattgtttagcattttgtgccataacat |
100 |
Q |
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| T |
36649953 |
ttcaaaaatttctactgtatgttctttagatatgattgaagcttaaggaaagatacaataggttcatatacatattgtttagcattttgtgccataacat |
36649854 |
T |
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| Q |
101 |
aatttgcatgagcataatcatttccatac--------aagcatatatgcatatgatcttgaagattttctaacagaagttgcatatctttaacatcagaa |
192 |
Q |
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| T |
36649853 |
aatttgcatgagcataatcatttccatactgcactacaagcatatatgcatatgatcttgaagattttctaacagaagttgcatatctttaacatcagaa |
36649754 |
T |
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| Q |
193 |
agagcatcaacacctccattactatggaagagaggaagttcatttgtaagtcttgtcat |
251 |
Q |
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| T |
36649753 |
agagcatcaacacctccattactatggaagagaggaagttcatttgtaagtcttgtcat |
36649695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 36643692 - 36643932
Alignment:
| Q |
20 |
tgttctttagatatgattgaagcttaaggaaagatacaagaggttcatatacatattgtttagcattttgtgccataacataatttgcatgagcataatc |
119 |
Q |
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| T |
36643692 |
tgttctttaactatcattgaagcttaaagaaagatataagaggttcatatacatcttgtttagcactttgagccataacataatctgcatgagcatagtc |
36643791 |
T |
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| Q |
120 |
atttccat--------acaagcatatatgcat-atgatcttgaagattttctaacagaagttgcatatctttaacatcagaaagagcatcaacacctcca |
210 |
Q |
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| T |
36643792 |
atttctgtactgcacgacaagcttatctgcatcatgatctttgagactttctaacagaagttgcacatctttaacatcagaaagagcatcggcacctcca |
36643891 |
T |
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| Q |
211 |
ttactatggaagagaggaagttcatttgtaagtcttgtcat |
251 |
Q |
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| T |
36643892 |
taactgacgaagagtggaaggtcatttggaagccttgtcat |
36643932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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