View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0942_low_80 (Length: 333)
Name: NF0942_low_80
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_80 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 11 - 319
Target Start/End: Original strand, 7142482 - 7142793
Alignment:
| Q |
11 |
caaacaacaatttaagttgtttgcttccagaagatattggtatattccttcctagcgttgactatctgaacttttcatggaatagctttgaaggaaatat |
110 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
7142482 |
caaacaacaatttaagtggtttgcttccagaagatattggtatattccttcctagtgttgactatctgaacttttcattgaatagctttcaaggaaatat |
7142581 |
T |
|
| Q |
111 |
accttcatcaattggtatgatgaaacaccttgatcatttctcggatgagttacctaaacaattggccaaagattgtaatagtttaaacaccttgatcctc |
210 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7142582 |
accttaatcaattggtatgatgaaacaccttgatcatttctcgggtgagttacctaaacaattggccaaagattgtgatagtttaaacaccttgatcctc |
7142681 |
T |
|
| Q |
211 |
tccaacaactttctaagtggtaatattcctaaattttatatttc---aatgtatttgaaaactttatttctcaataataacaactttagtggaacactgg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7142682 |
tccaacaactttctaagtggtaatattcctaaattttatatttcaataatgtatttgggaactttatttctcaataataacaactttggtggaacactgg |
7142781 |
T |
|
| Q |
308 |
aagatgtatttg |
319 |
Q |
| |
|
|||||||||||| |
|
|
| T |
7142782 |
aagatgtatttg |
7142793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 5182545 - 5182677
Alignment:
| Q |
11 |
caaacaacaatttaagttgtttgcttccagaagatattggtatattccttcctagcgttgactatctgaacttttcatggaatagctttgaaggaaatat |
110 |
Q |
| |
|
||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5182545 |
caaacaacaatttgagtggtttgcttccaaaagatattggtatattccttcctagtgttaagtatttgaacttttcatggaatagctttgaaggaaatat |
5182644 |
T |
|
| Q |
111 |
accttcatcaattggtatgatgaaacaccttga |
143 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||| |
|
|
| T |
5182645 |
accttcatcaattggtaagatgaaacaacttga |
5182677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 15 - 322
Target Start/End: Original strand, 5214106 - 5214434
Alignment:
| Q |
15 |
caacaatttaagttgtttgcttccagaagatattggtatattccttcctagcgttgactatctgaacttttcatggaatagctttgaaggaaatatacct |
114 |
Q |
| |
|
||||| ||||||| |||| |||||| ||||||||||||||||||||||||| ||| |||| |||| ||||||| |||| ||||||||||||||||||| |
|
|
| T |
5214106 |
caacagtttaagtggttttcttccaaaagatattggtatattccttcctagtgttacctatatgaatttttcatcaaataactttgaaggaaatatacct |
5214205 |
T |
|
| Q |
115 |
tcatcaattggtatgatgaaacaccttga---------------------tcatttctcggatgagttacctaaacaattggccaaagattgtaatagtt |
193 |
Q |
| |
|
||||||||||||| ||||||| | ||||| ||||||||| | |||||||||||||||| |||||| || |||| ||| || |
|
|
| T |
5214206 |
tcatcaattggtaagatgaaaaaacttgagtccttggacctctctcataatcatttctcaggtgagttacctaaacaactggccacaggttgtgataatt |
5214305 |
T |
|
| Q |
194 |
taaacaccttgatcctctccaacaactttctaagtggtaatattcctaaattttatatttcaatgtatttgaaaactttatttctcaataataacaactt |
293 |
Q |
| |
|
|| | ||||| |||||||||||||||||| ||| || |||||||||||||||| ||| ||| || || || |||||||||||||||||||||||| |
|
|
| T |
5214306 |
tacaatacttgaagctctccaacaactttctacatgggaacattcctaaattttataattccatgaatgtggaatttttatttctcaataataacaactt |
5214405 |
T |
|
| Q |
294 |
tagtggaacactggaagatgtatttggaa |
322 |
Q |
| |
|
|||||||||||| ||||||||||| |||| |
|
|
| T |
5214406 |
tagtggaacacttgaagatgtattgggaa |
5214434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 5195945 - 5196071
Alignment:
| Q |
11 |
caaacaacaatttaagttgtttgcttccagaagatattggtatattccttcctagcgttgactatctgaacttttcatggaatagctttgaaggaaatat |
110 |
Q |
| |
|
||||||||||||| ||| ||||||||||| ||||||| |||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5195945 |
caaacaacaatttgagtggtttgcttccaaaagatatcggtatattccttcctaatgttacctatttgaacttttcatggaatagctttgaaggaaatat |
5196044 |
T |
|
| Q |
111 |
accttcatcaattggtatgatgaaaca |
137 |
Q |
| |
|
||||||||||||||||| ||||||||| |
|
|
| T |
5196045 |
accttcatcaattggtaagatgaaaca |
5196071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 4842312 - 4842188
Alignment:
| Q |
11 |
caaacaacaatttaagttgtttgcttccagaagatattggtatattccttcctagcgttgactatctgaacttttcatggaatagctttgaaggaaatat |
110 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||| |||| |||| ||||||| |||| ||||||||||||||| |
|
|
| T |
4842312 |
caaacaacaattttagtggtttgcttccagaagatattggtatattccttcctagtgttacctatatgaatttttcatcaaataactttgaaggaaatat |
4842213 |
T |
|
| Q |
111 |
accttcatcaattggtatgatgaaa |
135 |
Q |
| |
|
||||||||||||| ||| ||||||| |
|
|
| T |
4842212 |
accttcatcaatttgtaagatgaaa |
4842188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 4856786 - 4856686
Alignment:
| Q |
11 |
caaacaacaatttaagttgtttgcttccagaagatattggtatattccttcctagcgttgactatctgaacttttcatggaatagctttgaaggaaatat |
110 |
Q |
| |
|
||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| ||| |||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
4856786 |
caaacaacaatttgagtggtttgcttccaaaagatattggtatattccttcctagtgttacctatttgaacatttcatggaatagctttgaaggaaatat |
4856687 |
T |
|
| Q |
111 |
a |
111 |
Q |
| |
|
| |
|
|
| T |
4856686 |
a |
4856686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 143 - 330
Target Start/End: Original strand, 5160453 - 5160637
Alignment:
| Q |
143 |
atcatttctcggatgagttacctaaacaattggccaaagattgtaatagtttaaacaccttgatcctctccaacaactttctaagtggtaatattcctaa |
242 |
Q |
| |
|
|||||||||||| ||||||||| |||||| |||||| ||||| | |||||||| |||| | ||||| ||||||||||||||||||||||||| || |
|
|
| T |
5160453 |
atcatttctcgggtgagttaccaaaacaactggccacagattctgatagtttactatacttgtccgtctccgacaactttctaagtggtaatattcccaa |
5160552 |
T |
|
| Q |
243 |
attttatatttcaatgtatttgaaaactttatttctcaataataacaactttagtggaacactggaagatgtatttggaagcaataca |
330 |
Q |
| |
|
||||| || || | | |||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| |||| ||||||| |
|
|
| T |
5160553 |
attttgtaatttaggga---tgaaaaatttatttcttaataataacaactttagtggaacacttgaagatgtattgggaaacaataca |
5160637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 5173216 - 5173334
Alignment:
| Q |
11 |
caaacaacaatttaagttgtttgcttccagaagatattggtatattccttcctagcgttgactatctgaacttttcatggaatagctttgaaggaaatat |
110 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||| ||||||||| || || |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5173216 |
caaacaacaattttagtggtttgcttccagaagatat------attccttccaagtattacctatttgaacttttcatggaatagctttgaaggaaatat |
5173309 |
T |
|
| Q |
111 |
accttcatcaattggtatgatgaaa |
135 |
Q |
| |
|
||||||||||||||||| ||||||| |
|
|
| T |
5173310 |
accttcatcaattggtaagatgaaa |
5173334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 5160366 - 5160416
Alignment:
| Q |
77 |
tgaacttttcatggaatagctttgaaggaaatataccttcatcaattggta |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5160366 |
tgaacttttcatggaatagctttgaaggaaatataccttcatcaattggta |
5160416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 143 - 331
Target Start/End: Original strand, 5196098 - 5196286
Alignment:
| Q |
143 |
atcatttctcggatgagttacctaaacaattggccaaagattgtaatagtttaaacaccttgatcctctccaacaactttctaagtggtaatattcctaa |
242 |
Q |
| |
|
|||||||||| | |||||||||||||||| |||||| || |||| ||| |||| | ||||| |||||||||||||||||| ||| || ||||| | |
|
|
| T |
5196098 |
atcatttctcaggtgagttacctaaacaactggccacaggttgtgataatttacaatacttgaagctctccaacaactttctacatgggaacattccaag |
5196197 |
T |
|
| Q |
243 |
attttatatttcaatgtatttgaaaactttatttctcaataataacaactttagtggaacactggaagatgtatttggaagcaatacaa |
331 |
Q |
| |
|
||||| || |||| || || || |||||||| |||||||||||||||||||||||||| ||||||||||| |||| ||||||| |
|
|
| T |
5196198 |
attttgtaattcagtgaatatgtttgggttatttcttaataataacaactttagtggaacacttgaagatgtattaggaaataatacaa |
5196286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 322
Target Start/End: Complemental strand, 4842159 - 4841989
Alignment:
| Q |
143 |
atcatttctcggatgagttacctaaacaattggccaaagattgtaatagtttaaacaccttgatcctctccaacaactttctaagtggtaatattcctaa |
242 |
Q |
| |
|
|||||||||| | |||||||||||||||| ||||| |||||| |||| |||| | |||||| ||||||||||||| |||| |||| ||||||||||| |
|
|
| T |
4842159 |
atcatttctcaggtgagttacctaaacaactggccgcagattgcaataatttacaatacttgattctctccaacaactctctatgtgggaatattcctaa |
4842060 |
T |
|
| Q |
243 |
attttatatttcaatgtatttgaaaactttatttctcaataataacaactttagtggaacactggaagatgtatttggaa |
322 |
Q |
| |
|
|||| || || || | |||||||||||||||||||||||||||||||||||| || |||||||| |||| |
|
|
| T |
4842059 |
attt---------gtgaatatggtagttttatttctcaataataacaactttagtggaacacttgatgatgtattgggaa |
4841989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 330
Target Start/End: Original strand, 5182820 - 5182879
Alignment:
| Q |
271 |
ttatttctcaataataacaactttagtggaacactggaagatgtatttggaagcaataca |
330 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||| | || ||||||| |
|
|
| T |
5182820 |
ttatttcttaataataacaactttagtggaacacttgaagatgtattggaaaacaataca |
5182879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 271 - 331
Target Start/End: Complemental strand, 4856531 - 4856471
Alignment:
| Q |
271 |
ttatttctcaataataacaactttagtggaacactggaagatgtatttggaagcaatacaa |
331 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||| ||||||||||| |||| ||||||| |
|
|
| T |
4856531 |
ttattgctcagtaataacaactttagtggaacacttgaagatgtattgggaaataatacaa |
4856471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 146 - 246
Target Start/End: Original strand, 5173366 - 5173466
Alignment:
| Q |
146 |
atttctcggatgagttacctaaacaattggccaaagattgtaatagtttaaacaccttgatcctctccaacaactttctaagtggtaatattcctaaatt |
245 |
Q |
| |
|
||||||| | |||||||||||||||| |||||| | |||| ||| |||| | |||||| ||||||||||||| |||| |||| |||||||||||||| |
|
|
| T |
5173366 |
atttctcaggtgagttacctaaacaactggccacatattgcgataatttacaatacttgattctctccaacaactctctacgtgggaatattcctaaatt |
5173465 |
T |
|
| Q |
246 |
t |
246 |
Q |
| |
|
| |
|
|
| T |
5173466 |
t |
5173466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University