View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_low_82 (Length: 328)
Name: NF0942_low_82
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_82 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 57 - 323
Target Start/End: Original strand, 10323263 - 10323527
Alignment:
| Q |
57 |
tctccattgtaaaataaaaataatttttcagtcattaagatactggaatatggtataaaatgactcgcaagttggatcacttgtagtgtcacatcagaca |
156 |
Q |
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| T |
10323263 |
tctccattgtaaaataaaaataatttttcagtcat-aagatactggaatatggtataaaatgactcgcaagttggatcacttgtagtgtcacatcagaca |
10323361 |
T |
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| Q |
157 |
tttgtggtggtattacaatttacaaatatattgtatttattgaaacaattgtgaatataaaggagctgatcattgatagatcagtacatgacaaagatac |
256 |
Q |
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| T |
10323362 |
tttgtggtggtattacaatttacaaatatattgtatttattgaaacaattgtgaatataaaggagctgatcattgatagatcagtacatgacaaagatac |
10323461 |
T |
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| Q |
257 |
gcatgtatnnnnnnnnttagaataagaattcaactttgtttacattggtagtttgtcctttgctact |
323 |
Q |
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| T |
10323462 |
gcatgtat-aaaaaaattagaataagaattcaactttgtttacattggtagtttgtcctttgttact |
10323527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 10323471 - 10323414
Alignment:
| Q |
1 |
ttatacatgcgtatctttgtcatattctgatctatcaattactagctcccttatattc |
58 |
Q |
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| T |
10323471 |
ttatacatgcgtatctttgtcatgtactgatctatcaatgatcagctcctttatattc |
10323414 |
T |
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