View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_low_85 (Length: 317)
Name: NF0942_low_85
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_85 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 5262495 - 5262757
Alignment:
| Q |
1 |
cttcccaagtgatggcatccgagaacaaaatccacatctattcagttcaagggataccaagttgagtaaataacagtccctaagccaatgtagaaagtca |
100 |
Q |
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| T |
5262495 |
cttcccaagtggtggcaaccgggaacaaaatccacatctattcagttcaagggataccaagttgagtaaataacagtccccaagccaatgtggaaagcct |
5262594 |
T |
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| Q |
101 |
gtgcctctgtagtcctcgatgatgagactattcaggttgctatttggttcgagaacctccaagacatccttctcaactattgagccatcagttgttcctc |
200 |
Q |
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| T |
5262595 |
gtgcctctgtagtcctcgatgatgagactattcaggttgctatttggttcgagaacctccaagacatccttctcaactattgagccatcagttgttcctt |
5262694 |
T |
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| Q |
201 |
tgtaaccatatctcatatgcaatgcttccagatgtgtcttatctctcaaatttgcttccacag |
263 |
Q |
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| T |
5262695 |
tgtaaccatatctcatatgcaatgcttccagatgtgtcttatctctcaaatttgcttccacag |
5262757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 24 - 263
Target Start/End: Original strand, 5279394 - 5279633
Alignment:
| Q |
24 |
aacaaaatccacatctattcagttcaagggataccaagttgagtaaataacagtccctaagccaatgtagaaagtcagtgcctctgtagtcctcgatgat |
123 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
5279394 |
aacaaaatccacatctattcagttcaagggatactaaattgagtaaataacagtccccaagccaatgtggaaagccagtgcctctgtagtcctcgatgat |
5279493 |
T |
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| Q |
124 |
gagactattcaggttgctatttggttcgagaacctccaagacatccttctcaactattgagccatcagttgttcctctgtaaccatatctcatatgcaat |
223 |
Q |
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| T |
5279494 |
gagactattgaggttgctatttggttcgagaacctccaagacatccctctcaactattgagccatcagttgttcttctgtaaccatacctcatatgcaat |
5279593 |
T |
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| Q |
224 |
gcttccagatgtgtcttatctctcaaatttgcttccacag |
263 |
Q |
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|||||| |||| |||||| | |||||||||||||||||| |
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| T |
5279594 |
acttccaaatgtctcttatttttcaaatttgcttccacag |
5279633 |
T |
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