View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_low_86 (Length: 316)
Name: NF0942_low_86
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_86 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 5e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 97 - 283
Target Start/End: Original strand, 7623235 - 7623421
Alignment:
| Q |
97 |
gttgaattatccatgtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctcccaagagttcctttgattctatcaa |
196 |
Q |
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| T |
7623235 |
gttgaattatccatgtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctcccaagagttcctttgattctatcaa |
7623334 |
T |
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| Q |
197 |
cccaacctaataatggaaaatgatcagaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaacttgcaatctacttc |
283 |
Q |
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| T |
7623335 |
cccaacctaacaatggaaaatgatcagaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaacttgcaatctacttc |
7623421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 99 - 283
Target Start/End: Original strand, 7636329 - 7636513
Alignment:
| Q |
99 |
tgaattatccatgtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctcccaagagttcctttgattctatcaacc |
198 |
Q |
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| T |
7636329 |
tgaattatccatgtggtcatcaataactctttggtatatcaaatccaactccttgaatgttttatcaagcctcccaagagttcctttgactctatcaatc |
7636428 |
T |
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| Q |
199 |
caacctaataatggaaaatgatcagaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaacttgcaatctacttc |
283 |
Q |
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| T |
7636429 |
caacccaacaatggaaaattatctgaaaagtaaaattcagccaacaaagcttgagcttcattaagcaaaacttgcaatctacttc |
7636513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 99 - 283
Target Start/End: Original strand, 7629546 - 7629730
Alignment:
| Q |
99 |
tgaattatccatgtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctcccaagagttcctttgattctatcaacc |
198 |
Q |
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||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||| | |
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| T |
7629546 |
tgaataatccatgtggtcatcaataactctttggtatatcaaatccaactccttgaacgttttatcaagcctcccaagtgttcctttgactctatcaatc |
7629645 |
T |
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| Q |
199 |
caacctaataatggaaaatgatcagaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaacttgcaatctacttc |
283 |
Q |
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| T |
7629646 |
caaccaaacaatggaaaattatctgaaaagtaaaattcagccaacaaagcttgagcttcattaagcaaaacttgcaatctacttc |
7629730 |
T |
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