View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_low_88 (Length: 313)
Name: NF0942_low_88
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_88 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 26456067 - 26456266
Alignment:
| Q |
18 |
cttcctcaagctctaaaactcccttcgttttttcacacttatcaataacagtataaaccnnnnnnngcaccatattttcttctaaatcttcgacctcggt |
117 |
Q |
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| T |
26456067 |
cttcctcaagctctaaaactcccttcgttttttcacacttatcaataacagtataaacctttttttgcaccatattttcttctaaatcttcgacctcggt |
26456166 |
T |
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| Q |
118 |
atctgactttgttttcatggtgttcccaacttaagcatccaacaacattcttatttgggctctcaacctttgagtggagattttcatttggttcatctca |
217 |
Q |
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| T |
26456167 |
atctgactttgttttcatggtgttcccaacttaagcatccaacaacattcttatttgggctctcaacctttgagtggagattttcatttggttcagctca |
26456266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 26455816 - 26455904
Alignment:
| Q |
122 |
gactttgttttcatggtgttcccaacttaagcatccaacaacattcttatttgggctctcaacctttgagtggagattttcatttggtt |
210 |
Q |
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| T |
26455816 |
gactttgtcatcatggtgttcccagctgaagcatccaccaactttcttattagggctctcaacctttgaggggagattttcatttggtt |
26455904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 26455375 - 26455414
Alignment:
| Q |
90 |
tattttcttctaaatcttcgacctcggtatctgactttgt |
129 |
Q |
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| T |
26455375 |
tattttcttctaaatctcggacctcggtatctgactttgt |
26455414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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