View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0942_low_9 (Length: 593)

Name: NF0942_low_9
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0942_low_9
NF0942_low_9
[»] chr3 (10 HSPs)
chr3 (99-416)||(27603169-27603486)
chr3 (118-416)||(3480338-3480636)
chr3 (118-416)||(15766410-15766708)
chr3 (118-416)||(20094041-20094339)
chr3 (11-97)||(27604863-27604949)
chr3 (277-416)||(17360642-17360781)
chr3 (277-416)||(17365284-17365423)
chr3 (273-416)||(53392601-53392743)
chr3 (361-416)||(43556173-43556228)
chr3 (316-416)||(28705982-28706082)
[»] chr8 (9 HSPs)
chr8 (118-416)||(19431849-19432147)
chr8 (118-416)||(19567999-19568297)
chr8 (118-416)||(21647473-21647771)
chr8 (149-416)||(32012135-32012402)
chr8 (272-392)||(21960404-21960523)
chr8 (273-402)||(8320978-8321106)
chr8 (359-416)||(4540087-4540144)
chr8 (273-350)||(7005949-7006027)
chr8 (359-416)||(6009597-6009654)
[»] scaffold0011 (1 HSPs)
scaffold0011 (118-416)||(3441-3739)
[»] chr6 (6 HSPs)
chr6 (118-416)||(19479952-19480250)
chr6 (118-412)||(17286169-17286462)
chr6 (118-416)||(22701637-22701935)
chr6 (316-416)||(10489743-10489843)
chr6 (146-250)||(29463538-29463642)
chr6 (311-392)||(29463701-29463782)
[»] chr4 (13 HSPs)
chr4 (107-413)||(17680738-17681044)
chr4 (103-416)||(54344766-54345079)
chr4 (118-416)||(8983676-8983974)
chr4 (118-416)||(13696916-13697214)
chr4 (118-416)||(21303224-21303522)
chr4 (118-416)||(40000647-40000945)
chr4 (150-416)||(36355751-36356017)
chr4 (150-416)||(54993032-54993298)
chr4 (244-416)||(13687976-13688148)
chr4 (165-325)||(24491953-24492113)
chr4 (275-416)||(16950214-16950351)
chr4 (275-399)||(12876633-12876756)
chr4 (273-402)||(7898482-7898610)
[»] chr2 (10 HSPs)
chr2 (99-412)||(27567721-27568035)
chr2 (118-416)||(44757991-44758289)
chr2 (118-416)||(42726839-42727137)
chr2 (202-416)||(13289095-13289307)
chr2 (224-391)||(27421273-27421440)
chr2 (158-415)||(3174668-3174927)
chr2 (19-99)||(39543260-39543340)
chr2 (327-416)||(28449581-28449668)
chr2 (207-250)||(15445122-15445165)
chr2 (357-416)||(32081387-32081447)
[»] chr5 (9 HSPs)
chr5 (108-416)||(41854987-41855295)
chr5 (118-416)||(24774749-24775047)
chr5 (118-416)||(42021390-42021688)
chr5 (150-416)||(17548803-17549068)
chr5 (150-416)||(17506513-17506778)
chr5 (163-416)||(25687265-25687517)
chr5 (190-347)||(25521960-25522118)
chr5 (357-416)||(13586111-13586170)
chr5 (49-98)||(28221795-28221844)
[»] scaffold0166 (1 HSPs)
scaffold0166 (118-416)||(17132-17430)
[»] scaffold0165 (1 HSPs)
scaffold0165 (118-416)||(13391-13689)
[»] scaffold0014 (1 HSPs)
scaffold0014 (118-416)||(27951-28249)
[»] chr7 (9 HSPs)
chr7 (118-416)||(33239581-33239879)
chr7 (118-416)||(47995378-47995676)
chr7 (150-416)||(17497410-17497676)
chr7 (150-416)||(17555538-17555804)
chr7 (150-416)||(15235065-15235330)
chr7 (118-402)||(14784909-14785191)
chr7 (274-394)||(15981051-15981171)
chr7 (198-247)||(21221649-21221698)
chr7 (340-416)||(21221476-21221552)
[»] chr1 (6 HSPs)
chr1 (118-416)||(27712849-27713147)
chr1 (103-416)||(37407807-37408120)
chr1 (150-416)||(5726555-5726821)
chr1 (273-388)||(16037963-16038077)
chr1 (273-402)||(11811209-11811337)
chr1 (369-416)||(17133531-17133578)
[»] scaffold0517 (1 HSPs)
scaffold0517 (150-416)||(1-267)
[»] scaffold0067 (2 HSPs)
scaffold0067 (316-412)||(32072-32168)
scaffold0067 (118-225)||(32177-32284)
[»] scaffold0468 (1 HSPs)
scaffold0468 (273-414)||(1101-1241)
[»] scaffold0061 (1 HSPs)
scaffold0061 (273-402)||(47458-47586)
[»] scaffold0017 (1 HSPs)
scaffold0017 (273-402)||(151047-151175)
[»] scaffold0015 (1 HSPs)
scaffold0015 (272-392)||(212325-212444)
[»] scaffold0070 (2 HSPs)
scaffold0070 (273-402)||(60856-60984)
scaffold0070 (273-402)||(65058-65186)
[»] scaffold0060 (1 HSPs)
scaffold0060 (274-402)||(50423-50550)


Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 99 - 416
Target Start/End: Complemental strand, 27603486 - 27603169
Alignment:
Q  99 acaacagggtatctttaagaatgcagtcctaaagtcatagtcctttctaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctac 198  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27603486 acaacaggatatctttgagaatgcagtcctaaagtcatagtcctttttaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctac 27603387  T
Q  199 ttgtaaacttgcataagagtcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttg 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27603386 ttgtaaacttgcataagagtcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccgccaatgatgctcgcatatttaatttg 27603287  T
Q  299 tataacaccatttccattgttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttc 398  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  27603286 tataacacgatttccattgttcttaaagagttttacacttggatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttt 27603187  T
Q  399 tcaatgtagtgagattga 416  Q
    ||||||||||||||||||    
T  27603186 tcaatgtagtgagattga 27603169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 118 - 416
Target Start/End: Complemental strand, 3480636 - 3480338
Alignment:
Q  118 aatgcagtcctaaagtcatagtcctttctaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagag 217  Q
    |||||||||||| |||||| ||| | |  | ||||| ||||||| |||| || || |||||||||||  |||||||||| || |||||||||||||| ||    
T  3480636 aatgcagtcctagagtcatggtcttcttcaagtatctcatgactctttcgatagcttgccaatgctccatgcttggcctgctcgtaaacttgcataatag 3480537  T
Q  218 tcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattg 317  Q
    ||||||| | ||| | | ||||||||||||||| ||| || ||||||||||||  ||||||||||||||||||| | ||||| |||||| || |||| ||    
T  3480536 tcccacggcgtagccgatgtcgggtctagtacaatcagtggcatatctgagactgccaatgatgctcgcatattcagtttgtctaacactatctccagtg 3480437  T
Q  318 ttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    |||||||| || || |||||| | ||| ||||| | |||||||||||||| || || |||||||||||||||||||||||||||| |||||||||||||    
T  3480436 ttcttaaatagcttcacacttgggtcacaaggtgtgctcgcaggtttacaatcgaagtaattatatttccttaagatcttctcaacgtagtgagattga 3480338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 118 - 416
Target Start/End: Complemental strand, 15766708 - 15766410
Alignment:
Q  118 aatgcagtcctaaagtcatagtcctttctaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagag 217  Q
    |||||||||||| |||||| ||| | |  | ||||| ||||||| |||| || || |||||||||||  |||||||||| || |||||||||||||| ||    
T  15766708 aatgcagtcctagagtcatggtcttcttcaagtatctcatgactctttcgatagcttgccaatgctccatgcttggcctgctcgtaaacttgcataatag 15766609  T
Q  218 tcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattg 317  Q
    ||||||| | ||| | | ||||||||||||||| ||| || ||||||||||||  ||||||||||| ||||||| | ||||| |||||| || |||| ||    
T  15766608 tcccacggcgtagccgatgtcgggtctagtacaatcagtggcatatctgagactgccaatgatgcttgcatattcagtttgtctaacactatctccagtg 15766509  T
Q  318 ttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    |||||||| || || |||||| | ||| ||||| | |||||||||||||| || || |||||||||||||||||||||||||||| |||||||||||||    
T  15766508 ttcttaaatagcttcacacttgggtcacaaggtgtgctcgcaggtttacaatcgaagtaattatatttccttaagatcttctcaacgtagtgagattga 15766410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 118 - 416
Target Start/End: Complemental strand, 20094339 - 20094041
Alignment:
Q  118 aatgcagtcctaaagtcatagtcctttctaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagag 217  Q
    |||||||||||| |||||| ||| | |  | ||||| ||||||| |||| || || |||||||||||  |||||||||| || |||||||||||||| ||    
T  20094339 aatgcagtcctagagtcatggtcttcttcaagtatctcatgactctttcgatagcttgccaatgctccatgcttggcctgctcgtaaacttgcataatag 20094240  T
Q  218 tcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattg 317  Q
    ||||||| | ||| | | ||||||||||||||| ||| || ||||||||||||  ||||||||||| ||||||| | ||||| |||||| || |||| ||    
T  20094239 tcccacggcgtagccgatgtcgggtctagtacaatcagtggcatatctgagactgccaatgatgcttgcatattcagtttgtctaacactatctccagtg 20094140  T
Q  318 ttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    |||||||| || || |||||| | ||| ||||| | |||||||||||||| || || |||||||||||||||||||||||||||| |||||||||||||    
T  20094139 ttcttaaatagcttcacacttgggtcacaaggtgtgctcgcaggtttacaatcgaagtaattatatttccttaagatcttctcaacgtagtgagattga 20094041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 27604949 - 27604863
Alignment:
Q  11 cacagaaggattaagttagcttacagattaagaaaacataatctttaagcaatccacggatctgttctcacacgagtggatatatct 97  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||    
T  27604949 cacaaaaggattaagttagcttacaaattaagaaaacataatctttaagcaatccacggatctgttctcacgtgattggatatatct 27604863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 277 - 416
Target Start/End: Original strand, 17360642 - 17360781
Alignment:
Q  277 tgatgctcgcatatttaatttgtataacaccatttccattgttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaata 376  Q
    ||||||||||||||| | ||||| ||||||  | |||| |||||||||| || || |||||| | ||| ||| | | |||||||||||||| || || ||    
T  17360642 tgatgctcgcatattcagtttgtctaacactctctccagtgttcttaaatagcttcacacttgggtcacaagttgtgctcgcaggtttacaatcgaagta 17360741  T
Q  377 attatatttccttaagatcttctcaatgtagtgagattga 416  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  17360742 attatatttccttaagatcttctcaacgtagtgagattga 17360781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 277 - 416
Target Start/End: Original strand, 17365284 - 17365423
Alignment:
Q  277 tgatgctcgcatatttaatttgtataacaccatttccattgttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaata 376  Q
    ||||||||||||||| | ||||| ||||||  | |||| |||||||||| || || |||||| | ||| ||| | | |||| ||||||||| |  || ||    
T  17365284 tgatgctcgcatattcagtttgtctaacactctctccagtgttcttaaatagcttcacacttgggtcacaagatgtgctcgaaggtttacaatagaagta 17365383  T
Q  377 attatatttccttaagatcttctcaatgtagtgagattga 416  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  17365384 attatatttccttaagatcttctcaacatagtgagattga 17365423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 273 - 416
Target Start/End: Original strand, 53392601 - 53392743
Alignment:
Q  273 ccaatgatgctcgcatatttaatttgtataacaccatttccattgttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaa 372  Q
    |||||||||||| ||||||  |||||| ||| ||||| || | | |||||||| |||||||||||| ||||||||| | | || ||| ||||| | || |    
T  53392601 ccaatgatgctcacatattctatttgtctaaaaccatctcaagtattcttaaatagttttacacttggatcataagatatgcttgcaagtttagactc-a 53392699  T
Q  373 aataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    |||||||| |||||||||| ||||||||||  | ||||||||||    
T  53392700 aataattacatttccttaatatcttctcaacattgtgagattga 53392743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 43556173 - 43556228
Alignment:
Q  361 gtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    ||||||| ||||| ||||||||||||| ||| ||||||||||  ||||||||||||    
T  43556173 gtttacaatcaaagtaattatatttccgtaatatcttctcaacatagtgagattga 43556228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 416
Target Start/End: Original strand, 28705982 - 28706082
Alignment:
Q  316 tgttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattg 415  Q
    |||||||||||||||||||||||  ||||||||||  || | || |||||||  |||  | |||||||||| |||| ||||||| ||  || ||||||||    
T  28705982 tgttcttaaagagttttacacttgaatcataaggtgcacacacaagtttacaaccaatgtgattatatttctttaaaatcttctaaacatattgagattg 28706081  T
Q  416 a 416  Q
    |    
T  28706082 a 28706082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 163; Significance: 9e-87; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 118 - 416
Target Start/End: Original strand, 19431849 - 19432147
Alignment:
Q  118 aatgcagtcctaaagtcatagtcctttctaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagag 217  Q
    |||||||||||||||||||||| | || || ||||| || |||| | ||||| |||||||||||||| ||||||||||||||||||||  ||||||||||    
T  19431849 aatgcagtcctaaagtcatagttccttttaagtatctcacgactctctcaattgcatgccaatgctccttgcttggcctacttgtaaatctgcataagag 19431948  T
Q  218 tcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattg 317  Q
    ||||||||||||||| | ||||||||||||||| ||| || ||||||||||||  ||||||||||||||||| | | ||||| | ||||||| |||| ||    
T  19431949 tcccacgacataggcgatgtcgggtctagtacaatcagtggcatatctgagactgccaatgatgctcgcatactcagtttgtctgacaccatctccagtg 19432048  T
Q  318 ttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    |||||||| |||||||||||| ||||||||||| | ||||||||| |||| |||||||| ||||||||||||||||||||||||| |||||||||||||    
T  19432049 ttcttaaaaagttttacacttggatcataaggtgtgctcgcaggtctacaatcaaaatatttatatttccttaagatcttctcaacgtagtgagattga 19432147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 118 - 416
Target Start/End: Original strand, 19567999 - 19568297
Alignment:
Q  118 aatgcagtcctaaagtcatagtcctttctaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagag 217  Q
    |||||||||||||||||||||| | || || ||||| || |||| | ||||| |||||||||||||| ||||||||||||||||||||  ||||||||||    
T  19567999 aatgcagtcctaaagtcatagttccttttaagtatctcacgactctctcaattgcatgccaatgctccttgcttggcctacttgtaaatctgcataagag 19568098  T
Q  218 tcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattg 317  Q
    ||||||||||||||| | ||||||||||||||| ||| || ||||||||||||  ||||||||||||||||| | | ||||| | ||||||| |||| ||    
T  19568099 tcccacgacataggcgatgtcgggtctagtacaatcagtggcatatctgagactgccaatgatgctcgcatactcagtttgtctgacaccatctccagtg 19568198  T
Q  318 ttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    |||||||| |||||||||||| ||||||||||| | ||||||||| |||| |||||||| ||||||||||||||||||||||||| |||||||||||||    
T  19568199 ttcttaaaaagttttacacttggatcataaggtgtgctcgcaggtctacaatcaaaatatttatatttccttaagatcttctcaacgtagtgagattga 19568297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 118 - 416
Target Start/End: Complemental strand, 21647771 - 21647473
Alignment:
Q  118 aatgcagtcctaaagtcatagtcctttctaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagag 217  Q
    |||||||||||| |||||| ||| | |  | ||||| ||||||| |||| || || |||||||||||  |||||||||| || |||||||||||||| ||    
T  21647771 aatgcagtcctagagtcatggtcttcttcaagtatctcatgactctttcgatagcttgccaatgctccatgcttggcctgctcgtaaacttgcataatag 21647672  T
Q  218 tcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattg 317  Q
    ||||||| | ||| | | ||||||||||||||| ||| || ||||||||||||  ||||||||||||||||||| | ||||| |||||| || |||| ||    
T  21647671 tcccacggcgtagccgatgtcgggtctagtacaatcagtggcatatctgagactgccaatgatgctcgcatattcagtttgtctaacactatctccagtg 21647572  T
Q  318 ttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    |||||||| || || |||||| | ||| ||||| | |||||||||||||| || || |||||||||||||||||||||||||||| |||||||||||||    
T  21647571 ttcttaaatagcttcacacttgggtcacaaggtgtgctcgcaggtttacaatcgaagtaattatatttccttaagatcttctcaacgtagtgagattga 21647473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 149 - 416
Target Start/End: Original strand, 32012135 - 32012402
Alignment:
Q  149 gtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagagtcccacgacataggcaaagtcgggtctagta 248  Q
    ||||| ||||||| |||| || || |||||||||||  || |||||||||| |||||||||||||| ||||||||| | ||| | | |||||||||||||    
T  32012135 gtatctcatgactctttcgatagcttgccaatgctccatgtttggcctactcgtaaacttgcataatagtcccacggcgtagccgatgtcgggtctagta 32012234  T
Q  249 cagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattgttcttaaagagttttacacttagatcataag 348  Q
    || ||| || ||||||||||||  ||||||||||||||||||| | ||||| |||||| || |||| |||||||||| || || |||||| | ||| |||    
T  32012235 caatcagtggcatatctgagactgccaatgatgctcgcatattcagtttgtctaacactatctccagtgttcttaaatagcttcacacttgggtcacaag 32012334  T
Q  349 gtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    || | |||||||||||||| || || |||||||||||||||||||||||||||| |||||||||||||    
T  32012335 gtgtgctcgcaggtttacaatcgaagtaattatatttccttaagatcttctcaacgtagtgagattga 32012402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 272 - 392
Target Start/End: Original strand, 21960404 - 21960523
Alignment:
Q  272 accaatgatgctcgcatatttaatttgtataacaccatttccattgttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtca 371  Q
    |||| |||||||||||||||  |||||| ||||||||| || | ||||||| || ||||||||||||||||||||| || | || ||| ||||| ||||     
T  21960404 accattgatgctcgcatattctatttgtctaacaccatctcaagtgttcttgaaaagttttacacttagatcataaagtgtgctagcaagtttatagtc- 21960502  T
Q  372 aaataattatatttccttaag 392  Q
    ||||||||| |||||||||||    
T  21960503 aaataattacatttccttaag 21960523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 273 - 402
Target Start/End: Complemental strand, 8321106 - 8320978
Alignment:
Q  273 ccaatgatgctcgcatatttaatttgtataacaccatttccattgttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaa 372  Q
    |||||||||||| ||||||   ||| | ||||||||| || | ||||||| || |||||||||||| |||||||| || | || ||| |||||||||| |    
T  8321106 ccaatgatgctcacatattctgtttatctaacaccatctcaagtgttcttgaaaagttttacacttggatcataaagtgtgctagcaagtttacagtc-a 8321008  T
Q  373 aataattatatttccttaagatcttctcaa 402  Q
    |||||||| ||||||||||||| |||||||    
T  8321007 aataattacatttccttaagatattctcaa 8320978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 4540144 - 4540087
Alignment:
Q  359 aggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    |||||| |||||||| || ||||||||||| |||||||||||||| ||| ||||||||    
T  4540144 aggtttgcagtcaaagtatttatatttcctcaagatcttctcaatatagcgagattga 4540087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 350
Target Start/End: Original strand, 7005949 - 7006027
Alignment:
Q  273 ccaatgatgctcgcatatt-taatttgtataacaccatttccattgttcttaaagagttttacacttagatcataaggt 350  Q
    ||||||||||||| ||||| || ||||| ||||| | | || |  |||||||||||||||||||||| |||||||||||    
T  7005949 ccaatgatgctcgtatattctattttgtctaacatcgtctcaagcgttcttaaagagttttacacttggatcataaggt 7006027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 6009654 - 6009597
Alignment:
Q  359 aggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    |||||| ||||||||||||||||||||  | |||||||||||||  ||||||| ||||    
T  6009654 aggtttgcagtcaaaataattatattttttgaagatcttctcaacatagtgaggttga 6009597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 118 - 416
Target Start/End: Original strand, 3441 - 3739
Alignment:
Q  118 aatgcagtcctaaagtcatagtcctttctaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagag 217  Q
    |||||||||||||||||||||| | || |||||||| ||||||| | ||||| |||||||||||||| ||||||||||||||||||||  ||||||||||    
T  3441 aatgcagtcctaaagtcatagttccttttaggtatctcatgactctctcaattgcatgccaatgctccttgcttggcctacttgtaaatctgcataagag 3540  T
Q  218 tcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattg 317  Q
    ||||||||||||||| | ||| ||||||||||| ||| || ||||||||||||  ||||||||||||||||| | | ||||| |||||| || |||| ||    
T  3541 tcccacgacataggcgatgtcaggtctagtacaatcagtggcatatctgagactgccaatgatgctcgcataatcagtttgtctaacacaatctccagtg 3640  T
Q  318 ttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    |||||||| || || |||||| ||||| ||||| | |||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||    
T  3641 ttcttaaaaagattaacacttggatcaaaaggtgtgctcgcaggtttacaataaaaataattatatttccttaagatcttctcaacgtagtgagattga 3739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 143; Significance: 8e-75; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 118 - 416
Target Start/End: Original strand, 19479952 - 19480250
Alignment:
Q  118 aatgcagtcctaaagtcatagtcctttctaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagag 217  Q
    ||||||||||||||| ||||| || ||  ||||||| ||||||| | | ||| |||||||||||||| ||||||||||||||||||||  ||||||||||    
T  19479952 aatgcagtcctaaaggcatagcccctttcaggtatctcatgactctcttaattgcatgccaatgctccttgcttggcctacttgtaaatctgcataagag 19480051  T
Q  218 tcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattg 317  Q
    ||||||||||||||| | ||| ||||||||| | ||| || ||||||||||||  ||||||||||||||||| | | ||||| | ||||||| |||| ||    
T  19480052 tcccacgacataggcgatgtcaggtctagtataatcagtggcatatctgagactgccaatgatgctcgcatactcagtttgtctgacaccatatccagtg 19480151  T
Q  318 ttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    ||| |||| | |||||||||| ||||||||||| | || ||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||    
T  19480152 ttcataaaaaattttacacttggatcataaggtgtgcttgcaggtttacaatcaaaatatttatatttccttaagatcttctcaacgtagtgagattga 19480250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 118 - 412
Target Start/End: Complemental strand, 17286462 - 17286169
Alignment:
Q  118 aatgcagtcctaaagtcatagtcctttctaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagag 217  Q
    |||||| ||| ||||||||||||| ||  ||||| | ||||||| | ||||| |||||||| ||||| |||||||||||||||||||| |||||||||||    
T  17286462 aatgcaatcccaaagtcatagtccctttcaggtacctcatgactctctcaattgcatgccagtgctccttgcttggcctacttgtaaatttgcataagag 17286363  T
Q  218 tcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattg 317  Q
    ||||||||||||||||| ||||| ||||||||| ||| || ||||||||||||  ||||||||||||||||| | | ||||| ||  ||||| |||| |     
T  17286362 tcccacgacataggcaatgtcgg-tctagtacaatcagtggcatatctgagactgccaatgatgctcgcatactcagtttgtctattaccatctccagtt 17286264  T
Q  318 ttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgaga 412  Q
    |||||||| |||||||||||| ||||||||||| | || ||||||||||| |||||||||||||||||| |||| ||||| ||||  ||||||||    
T  17286263 ttcttaaaaagttttacacttggatcataaggtgtgcttgcaggtttacaatcaaaataattatatttctttaaaatcttttcaacatagtgaga 17286169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 118 - 416
Target Start/End: Complemental strand, 22701935 - 22701637
Alignment:
Q  118 aatgcagtcctaaagtcatagtcctttctaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagag 217  Q
    |||||||||||| |||||| ||| | |  | ||||| ||||||| |||| || || |||||||||||  |||||||||| || |||||||||||||| ||    
T  22701935 aatgcagtcctagagtcatggtcttcttcaagtatctcatgactctttcgatagcttgccaatgctccatgcttggcctgctcgtaaacttgcataatag 22701836  T
Q  218 tcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattg 317  Q
    ||||||| | ||| | | ||||||||||||||| ||| || ||||||||||||  ||||||||||||||||||| | ||||| |||||| || |||| ||    
T  22701835 tcccacggcgtagccgatgtcgggtctagtacaatcagtggcatatctgagactgccaatgatgctcgcatattcagtttgtctaacactatctccagtg 22701736  T
Q  318 ttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    |||||||| || || |||||| | ||| ||||| | |||||||||||||| || || |||||||||||||||||||||||||||| |||||||||||||    
T  22701735 ttcttaaatagcttcacacttgggtcacaaggtgtgctcgcaggtttacaatcgaagtaattatatttccttaagatcttctcaacgtagtgagattga 22701637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 316 - 416
Target Start/End: Original strand, 10489743 - 10489843
Alignment:
Q  316 tgttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattg 415  Q
    ||||||||||   |||||||||| ||||||||||| | || ||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||    
T  10489743 tgttcttaaaattttttacacttggatcataaggtgtgcttgcaggtttacaatcaaaataattatatttccgtaagatcttctcaacgtagtgagattg 10489842  T
Q  416 a 416  Q
    |    
T  10489843 a 10489843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 250
Target Start/End: Original strand, 29463538 - 29463642
Alignment:
Q  146 taggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagagtcccacgacataggcaaagtcgggtcta 245  Q
    |||||| | ||||||| ||||||| ||| | |||| ||  || ||||| ||| | |||||||||||||||||||||||||  ||||||| ||| ||||||    
T  29463538 taggtaactcatgactctttcaatagcaagtcaattcttcttacttggtctattggtaaacttgcataagagtcccacgatgtaggcaatgtctggtcta 29463637  T
Q  246 gtaca 250  Q
    |||||    
T  29463638 gtaca 29463642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 392
Target Start/End: Original strand, 29463701 - 29463782
Alignment:
Q  311 tccattgttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaag 392  Q
    |||| ||||||| ||||||||||||||| |||| ||||   | || ||| ||||| |||||||||| ||| |||||||||||    
T  29463701 tccaatgttcttgaagagttttacacttggatcgtaagtgatgcttgcaagtttaaagtcaaaatatttaaatttccttaag 29463782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 5e-70; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 107 - 413
Target Start/End: Complemental strand, 17681044 - 17680738
Alignment:
Q  107 gtatctttaagaatgcagtcctaaagtcatagtcctttctaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaac 206  Q
    |||||||| | ||||||||||||| ||||  ||||||| |||||||| ||||||||| ||||  ||||||||||||||||||||| ||||||||||||||    
T  17681044 gtatctttgataatgcagtcctaacgtcacggtcctttttaggtatctcatgactatctcaagtgcatgccaatgctcattgcttagcctacttgtaaac 17680945  T
Q  207 ttgcataagagtcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacac 306  Q
    |||||||||||||||||||||||||||| |||| | |||||||||||| || |||||||||||| | | ||||||||| |||||| | ||||| ||||||    
T  17680944 ttgcataagagtcccacgacataggcaatgtcgagactagtacagtcagtggcatatctgagactatcgatgatgctcacatattcagtttgtctaacac 17680845  T
Q  307 catttccattgttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgta 406  Q
    ||| | || ||||||||||  |||||||||||  ||||||| ||||    | || |||||||||||| |||||||||||  ||||||||||||  | |||    
T  17680844 catattcagtgttcttaaaatgttttacacttgaatcataaagtttgtatgtagttttacagtcaaagtaattatatttatttaagatcttctttacgta 17680745  T
Q  407 gtgagat 413  Q
    |||||||    
T  17680744 gtgagat 17680738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 103 - 416
Target Start/End: Original strand, 54344766 - 54345079
Alignment:
Q  103 cagggtatctttaagaatgcagtcctaaagtcatagtcctttctaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgt 202  Q
    |||| ||||||| | |||||||||||| |||||| ||| | |  | ||||| ||||||| |||| || || |||||||||||  |||||||||| || ||    
T  54344766 caggatatctttgataatgcagtcctagagtcatggtcttcttcaagtatctcatgactctttcgatagcttgccaatgctccatgcttggcctgctcgt 54344865  T
Q  203 aaacttgcataagagtcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtata 302  Q
    |||||||||||| ||||||||| | ||| | | ||||||||||||||| ||| || ||||||||||||  ||||||||||||||||||| | ||||| ||    
T  54344866 aaacttgcataatagtcccacggcgtagccgatgtcgggtctagtacaatcagtggcatatctgagactgccaatgatgctcgcatattcagtttgtcta 54344965  T
Q  303 acaccatttccattgttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaa 402  Q
    |||| || |||| |||||||||| || || |||||| | ||| ||||| | |||||||||||||| || || ||||||||||||||||||||||||||||    
T  54344966 acactatctccagtgttcttaaatagcttcacacttgggtcacaaggtgtgctcgcaggtttacaatcgaagtaattatatttccttaagatcttctcaa 54345065  T
Q  403 tgtagtgagattga 416  Q
     |||||||||||||    
T  54345066 cgtagtgagattga 54345079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 118 - 416
Target Start/End: Complemental strand, 8983974 - 8983676
Alignment:
Q  118 aatgcagtcctaaagtcatagtcctttctaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagag 217  Q
    |||||||||||| |||||| ||| | |  | ||||| ||||||| |||| || || |||||||||||  |||||||||| || |||||||||||||| ||    
T  8983974 aatgcagtcctagagtcatggtcttcttcaagtatctcatgactctttcgatagcttgccaatgctccatgcttggcctgctcgtaaacttgcataatag 8983875  T
Q  218 tcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattg 317  Q
    ||||||| | ||| | | ||||||||||||||| ||| || ||||||||||||  ||||||||||||||||||| | ||||| |||||| || |||| ||    
T  8983874 tcccacggcgtagccgatgtcgggtctagtacaatcagtggcatatctgagactgccaatgatgctcgcatattcagtttgtctaacactatctccagtg 8983775  T
Q  318 ttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    |||||||| || || |||||| | ||| ||||| | |||||||||||||| || || |||||||||||||||||||||||||||| |||||||||||||    
T  8983774 ttcttaaatagcttcacacttgggtcacaaggtgtgctcgcaggtttacaatcgaagtaattatatttccttaagatcttctcaacgtagtgagattga 8983676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 118 - 416
Target Start/End: Original strand, 13696916 - 13697214
Alignment:
Q  118 aatgcagtcctaaagtcatagtcctttctaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagag 217  Q
    |||||||||||| |||||| ||| | |  | ||||| ||||||| |||| || || |||||||||||  |||||||||| || |||||||||||||| ||    
T  13696916 aatgcagtcctagagtcatggtcttcttcaagtatctcatgactctttcgatagcttgccaatgctccatgcttggcctgctcgtaaacttgcataatag 13697015  T
Q  218 tcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattg 317  Q
    ||||||| | ||| | | ||||||||||||||| ||| || ||||||||||||  ||||||||||||||||||| | ||||| |||||| || |||| ||    
T  13697016 tcccacggcgtagccgatgtcgggtctagtacaatcagtggcatatctgagactgccaatgatgctcgcatattcagtttgtctaacactatctccagtg 13697115  T
Q  318 ttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    |||||||| || || |||||| | ||| ||||| | |||||||||||||| || || |||||||||||||||||||||||||||| |||||||||||||    
T  13697116 ttcttaaatagcttcacacttgggtcacaaggtgtgctcgcaggtttacaatcgaagtaattatatttccttaagatcttctcaacgtagtgagattga 13697214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 118 - 416
Target Start/End: Complemental strand, 21303522 - 21303224
Alignment:
Q  118 aatgcagtcctaaagtcatagtcctttctaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagag 217  Q
    |||||||||||| |||||| ||| | |  | ||||| ||||||| |||| || || |||||||||||  |||||||||| || |||||||||||||| ||    
T  21303522 aatgcagtcctagagtcatggtcttcttcaagtatctcatgactctttcgatagcttgccaatgctccatgcttggcctgctcgtaaacttgcataatag 21303423  T
Q  218 tcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattg 317  Q
    ||||||| | ||| | | ||||||||||||||| ||| || ||||||||||||  ||||||||||||||||||| | ||||| |||||| || |||| ||    
T  21303422 tcccacggcgtagccgatgtcgggtctagtacaatcagtggcatatctgagactgccaatgatgctcgcatattcagtttgtctaacactatctccagtg 21303323  T
Q  318 ttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    |||||||| || || |||||| | ||| ||||| | |||||||||||||| || || |||||||||||||||||||||||||||| |||||||||||||    
T  21303322 ttcttaaatagcttcacacttgggtcacaaggtgtgctcgcaggtttacaatcgaagtaattatatttccttaagatcttctcaacgtagtgagattga 21303224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 118 - 416
Target Start/End: Original strand, 40000647 - 40000945
Alignment:
Q  118 aatgcagtcctaaagtcatagtcctttctaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagag 217  Q
    |||||||||||| |||||| ||| | |  | ||||| ||||||| |||| || || |||||||||||  |||||||||| || |||||||||||||| ||    
T  40000647 aatgcagtcctagagtcatggtcttcttcaagtatctcatgactctttcgatagcttgccaatgctccatgcttggcctgctcgtaaacttgcataatag 40000746  T
Q  218 tcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattg 317  Q
    ||||||| | |||   | ||||||||||||||| ||| || ||||||||||||  ||||||||||||||||||| | ||||| |||||| || |||| ||    
T  40000747 tcccacggcgtagctgatgtcgggtctagtacaatcagtggcatatctgagactgccaatgatgctcgcatattcagtttgtctaacactatctccagtg 40000846  T
Q  318 ttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    |||||||| || || |||||| | ||| ||||| | |||||||||||||| |  || |||||||||||||||||||||||||||| |||||||||||||    
T  40000847 ttcttaaatagcttcacacttgggtcacaaggtgtgctcgcaggtttacaatagaagtaattatatttccttaagatcttctcaacgtagtgagattga 40000945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 150 - 416
Target Start/End: Original strand, 36355751 - 36356017
Alignment:
Q  150 tatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagagtcccacgacataggcaaagtcgggtctagtac 249  Q
    |||| ||||||| |||| || || |||||||||||  |||||||||| || |||||||||||||  ||||||||| | ||| | | ||||||| ||||||    
T  36355751 tatctcatgactctttccatagcttgccaatgctccatgcttggcctgctcgtaaacttgcatagtagtcccacggcgtagccgatgtcgggtttagtac 36355850  T
Q  250 agtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattgttcttaaagagttttacacttagatcataagg 349  Q
    | ||| || ||||||||||||  ||||||||||||||||||| | ||||| |||||| || |||| |||||||||| || || |||||| | ||| ||||    
T  36355851 aatcagtggcatatctgagactgccaatgatgctcgcatattcagtttgtctaacactatctccagtgttcttaaatagcttcacacttgggtcacaagg 36355950  T
Q  350 tttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    | | |||||||||||||| || || |||||||||||||||||||||||||||| |||||||||||||    
T  36355951 tgtgctcgcaggtttacaatcgaagtaattatatttccttaagatcttctcaacgtagtgagattga 36356017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 150 - 416
Target Start/End: Original strand, 54993032 - 54993298
Alignment:
Q  150 tatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagagtcccacgacataggcaaagtcgggtctagtac 249  Q
    |||| ||||||| ||||||| || || ||||||||  |||||||||| || |||||||||||||  ||||||||| | ||| | | ||||||| ||||||    
T  54993032 tatctcatgactctttcaatagcttgtcaatgctccatgcttggcctgctcgtaaacttgcatagtagtcccacggcgtagccgatgtcgggtttagtac 54993131  T
Q  250 agtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattgttcttaaagagttttacacttagatcataagg 349  Q
    | ||| || ||||||||||||   |||||||||||||||||| | ||||| |||||| || |||| |||||||||| || || |||||| | ||| ||||    
T  54993132 aatcagtggcatatctgagactgtcaatgatgctcgcatattcagtttgtctaacactatctccagtgttcttaaatagcttcacacttgggtcacaagg 54993231  T
Q  350 tttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    | | |||||||||||||| || || ||||||||||||||||||||||||||||  ||||||||||||    
T  54993232 tgtgctcgcaggtttacaatcgaagtaattatatttccttaagatcttctcaacatagtgagattga 54993298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 244 - 416
Target Start/End: Original strand, 13687976 - 13688148
Alignment:
Q  244 tagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattgttcttaaagagttttacacttagatc 343  Q
    ||||||| ||| || ||||||||||||  ||||||||||||||||||| | ||||| |||||| || |||| |||||||||| || || |||||| | ||    
T  13687976 tagtacaatcagtggcatatctgagactgccaatgatgctcgcatattcagtttgtctaacactatctccagtgttcttaaatagcttcacacttgggtc 13688075  T
Q  344 ataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    | ||||| | |||||||||||||| |  || |||||||||||||||||||||||||||| |||||||||||||    
T  13688076 acaaggtgtgctcgcaggtttacaatttaagtaattatatttccttaagatcttctcaacgtagtgagattga 13688148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 165 - 325
Target Start/End: Original strand, 24491953 - 24492113
Alignment:
Q  165 tcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagagtcccacgacataggcaaagtcgggtctagtacagtcactgacatatc 264  Q
    ||||| ||||| |||||||| ||||||||||||||||||||  ||||||||||||| | ||||||| | | ||||||||||||||| ||| || ||||||    
T  24491953 tcaattgcatgtcaatgctccttgcttggcctacttgtaaatctgcataagagtccgatgacatagccgatgtcgggtctagtacaatcagtggcatatc 24492052  T
Q  265 tgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattgttcttaaa 325  Q
    ||||||   |||||||||| ||||| |   ||||| | ||||||| |||| ||||||||||    
T  24492053 tgagactttcaatgatgcttgcatactccgtttgtctgacaccatctccagtgttcttaaa 24492113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 275 - 416
Target Start/End: Original strand, 16950214 - 16950351
Alignment:
Q  275 aatgatgctcgcatatttaatttgtataacaccatttccattgttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaa 374  Q
    ||||||||| |||||||   ||||| ||||||||| || | ||||||| ||||||||  ||||| ||||||||||| | || ||| ||||| ||||||||    
T  16950214 aatgatgcttgcatattatttttgtctaacaccatctcaagtgttcttgaagagttt--cacttggatcataaggtgtgcttgcaagtttaaagtcaaaa 16950311  T
Q  375 taattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    ||||| |||||||||  ||||||||||| |||| ||||||||    
T  16950312 taattgtatttcctt--gatcttctcaacgtagagagattga 16950351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 399
Target Start/End: Original strand, 12876633 - 12876756
Alignment:
Q  275 aatgatgctcgcatatttaatttgtataacaccatttccattgttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaa 374  Q
    |||||||||| ||||||  ||| |  |||| ||||||| | ||||||| ||||||||||||||| ||||||||| | | || ||| ||||||||||  ||    
T  12876633 aatgatgctcacatattctattcgactaactccatttcaagtgttcttgaagagttttacacttggatcataagatatccttgcaagtttacagtc-taa 12876731  T
Q  375 taattatatttccttaagatcttct 399  Q
    |||||| ||||||||||||||||||    
T  12876732 taattacatttccttaagatcttct 12876756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 273 - 402
Target Start/End: Complemental strand, 7898610 - 7898482
Alignment:
Q  273 ccaatgatgctcgcatatttaatttgtataacaccatttccattgttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaa 372  Q
    |||||||||||| ||||||   ||||| ||||||||| || | ||||||| || ||||||||| || |||||||| || | || ||| |||||||||  |    
T  7898610 ccaatgatgctcacatattatgtttgtctaacaccatctcaagtgttcttgaaaagttttacatttggatcataaagtgtgctagcaagtttacagt-ta 7898512  T
Q  373 aataattatatttccttaagatcttctcaa 402  Q
    |||||||| ||||||||||||| |||||||    
T  7898511 aataattacatttccttaagatattctcaa 7898482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 3e-68; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 99 - 412
Target Start/End: Original strand, 27567721 - 27568035
Alignment:
Q  99 acaacagggtatctttaagaatgcagtcctaaagtcatagtc-ctttctaggtatcccatgactatttcaatcgcatgccaatgctcatt-gcttggcct 196  Q
    |||||| | ||||||| | |||||| |||||||||||||||| ||||| |||||||  |||||| | ||||||| ||| |||||||| || |||||||||    
T  27567721 acaacaagatatctttgataatgcaatcctaaagtcatagtcactttc-aggtatctgatgactctctcaatcgtatgtcaatgctcctttgcttggcct 27567819  T
Q  197 acttgtaaacttgcataagagtcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatt 296  Q
    |||||||||  ||| ||||||||||||||||||||||| || |||| ||||||| ||  |  ||||||||||||  ||||||||||||||||||||| ||    
T  27567820 acttgtaaatctgcgtaagagtcccacgacataggcaatgttgggtatagtacaatctgtagcatatctgagactgccaatgatgctcgcatatttagtt 27567919  T
Q  297 tgtataacaccatttccattgttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatct 396  Q
    ||| |||||| || | || |||| |||||||||||||||||| ||||||||||| | |||||| ||||||| || ||||| |||||||||||||||||||    
T  27567920 tgtctaacactatcttcaatgttgttaaagagttttacacttggatcataaggtgtgctcgcatgtttacaatcgaaatagttatatttccttaagatct 27568019  T
Q  397 tctcaatgtagtgaga 412  Q
    |||||| |||||||||    
T  27568020 tctcaacgtagtgaga 27568035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 118 - 416
Target Start/End: Complemental strand, 44758289 - 44757991
Alignment:
Q  118 aatgcagtcctaaagtcatagtcctttctaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagag 217  Q
    |||||||||||| |||||| ||| | |  | ||||| ||||||| |||| || || |||||||||||  |||||||||| || |||||||||||||| ||    
T  44758289 aatgcagtcctagagtcatggtcttcttcaagtatctcatgactctttcgatagcttgccaatgctccatgcttggcctgctcgtaaacttgcataatag 44758190  T
Q  218 tcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattg 317  Q
    ||||||| | ||| | | ||||||||||||||| ||| || ||||||||||||  ||||||||||||||||||| | ||||| |||||| || |||| ||    
T  44758189 tcccacggcgtagccgatgtcgggtctagtacaatcagtggcatatctgagactgccaatgatgctcgcatattcagtttgtctaacactatctccagtg 44758090  T
Q  318 ttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    |||||||| || || |||||| | ||| ||||| | |||||||||||||| || || |||||||||||||||||||||||||||| |||||||||||||    
T  44758089 ttcttaaatagcttcacacttgggtcacaaggtgtgctcgcaggtttacaatcgaagtaattatatttccttaagatcttctcaacgtagtgagattga 44757991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 118 - 416
Target Start/End: Complemental strand, 42727137 - 42726839
Alignment:
Q  118 aatgcagtcctaaagtcatagtcctttctaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagag 217  Q
    |||||||||||| |||||| ||| | |  | ||||| ||||||| |||| || || |||||||||||  |||||||||| || |||||||||||||| ||    
T  42727137 aatgcagtcctagagtcatggtcttcttcaagtatctcatgactctttcgatagcttgccaatgctccatgcttggcctgctcgtaaacttgcataatag 42727038  T
Q  218 tcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattg 317  Q
    ||||||| | ||| | | ||||||||||||||| ||| || ||||||||||||  ||||||||||| ||||||| | ||||| |||||| || |||| ||    
T  42727037 tcccacggcgtagccgatgtcgggtctagtacaatcagtggcatatctgagactgccaatgatgcttgcatattcagtttgtctaacactatctccagtg 42726938  T
Q  318 ttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    |||||||| || || |||||| | ||| ||||| | |||||||||||||| || || |||||||||||||||||||||||||||| |||||||||||||    
T  42726937 ttcttaaatagcttcacacttgggtcacaaggtgtgctcgcaggtttacaatcgaagtaattatatttccttaagatcttctcaacgtagtgagattga 42726839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 202 - 416
Target Start/End: Complemental strand, 13289307 - 13289095
Alignment:
Q  202 taaacttgcataagagtcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtat 301  Q
    |||||||| | |||||||||||||| ||| ||| ||| ||| || |||| ||| |||| || | ||| |  ||||||| |||||| |||||  ||||| |    
T  13289307 taaacttggacaagagtcccacgacgtagacaatgtcaggtataatacaatcagtgacgtacccgaggcttccaatgaagctcgcttattttgtttgtct 13289208  T
Q  302 aacaccatttccattgttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctca 401  Q
    |||||||| || | |||||||||||||||| ||  |||||||||||||| | || ||| |||||||||||||||||||||||||||||||||||||||||    
T  13289207 aacaccatctcaagtgttcttaaagagtttaac--ttagatcataaggtgtgcttgcaagtttacagtcaaaataattatatttccttaagatcttctca 13289110  T
Q  402 atgtagtgagattga 416  Q
       ||||||||||||    
T  13289109 gcatagtgagattga 13289095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 224 - 391
Target Start/End: Complemental strand, 27421440 - 27421273
Alignment:
Q  224 gacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattgttctta 323  Q
    |||||| |||| ||||||||||||||| ||| ||||||| || || |  | |||||||||  ||||||| |||||| ||||||||| |||| |||| ||     
T  27421440 gacatatgcaatgtcgggtctagtacaatcattgacatacctaagtcttctaatgatgctatcatattttatttgtctaacaccatctccagtgttgttg 27421341  T
Q  324 aagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaa 391  Q
    ||| |||||||| || ||||||||||||| || ||| |||||  ||||||||||||||||||||||||    
T  27421340 aagggttttacattttgatcataaggttttcttgcatgtttatggtcaaaataattatatttccttaa 27421273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 158 - 415
Target Start/End: Complemental strand, 3174927 - 3174668
Alignment:
Q  158 gactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagagtcccacgacataggcaaagtcgggtctagtacagtcactg 257  Q
    |||| ||||||| ||||| |||||||  | || ||| ||||| ||||||||| | || |||| |||||| | ||||| |||||||||| || | | | ||    
T  3174927 gactctttcaatagcatggcaatgcttctcgcatggtctactagtaaacttgaacaaaagtctcacgacgtgggcaacgtcgggtctaatatatttagtg 3174828  T
Q  258 acatatctgagacca-ccaatgatgctcgcatatttaatttgtataacaccatttccattgttcttaaagagttttacacttagatcataaggtttactc 356  Q
    ||||| || ||| |  |||||||||||||||||||   ||||| ||| |   | || | ||||||| |||||||||||||||  | |||||||| | |      
T  3174827 acataactaagaactgccaatgatgctcgcatattatgtttgtctaataaattctcaagtgttcttgaagagttttacacttgaaccataaggtgtgcat 3174728  T
Q  357 gcag-gtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattg 415  Q
    |||  |||| ||||||||||||||| |||||||||||||||||||||  |||||||||||    
T  3174727 gcaaagtttccagtcaaaataattacatttccttaagatcttctcaacatagtgagattg 3174668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 39543260 - 39543340
Alignment:
Q  19 gattaagttagcttacagattaagaaaacataatctttaagcaatccacggatctgttctcacacgagtggatatatctga 99  Q
    ||||||| || ||||| |||||||||||| || |||||||||||||  |||||| ||| |||| | |||||||||||||||    
T  39543260 gattaagctaacttacggattaagaaaacttagtctttaagcaatctgcggatcggttttcactcaagtggatatatctga 39543340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 416
Target Start/End: Original strand, 28449581 - 28449668
Alignment:
Q  327 agttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    |||||||||| | ||| ||||||| | || ||| ||||||| |||||||||||||||||||||  |||||||||||  |||||| |||||    
T  28449581 agttttacacatggataataaggtgtgcttgcatgtttacaatcaaaataattatatttcctt--gatcttctcaacatagtgatattga 28449668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 15445165 - 15445122
Alignment:
Q  207 ttgcataagagtcccacgacataggcaaagtcgggtctagtaca 250  Q
    ||||| |||||||||||||||||||||| |||||||||| ||||    
T  15445165 ttgcacaagagtcccacgacataggcaatgtcgggtctattaca 15445122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 357 - 416
Target Start/End: Original strand, 32081387 - 32081447
Alignment:
Q  357 gcaggtttacagtcaaaataattata-tttccttaagatcttctcaatgtagtgagattga 416  Q
    ||||||||| |||||||||||||||| ||||  | ||||||||||||  ||||||||||||    
T  32081387 gcaggtttagagtcaaaataattatattttcaatgagatcttctcaacatagtgagattga 32081447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 1e-61; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 108 - 416
Target Start/End: Original strand, 41854987 - 41855295
Alignment:
Q  108 tatctttaagaatgcagtcctaaagtcatagtcctttctaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaact 207  Q
    ||||||| | |||||||||||| |||||| ||| | |  | ||||| ||||||| |||| || || |||||||||||  |||||||||| || |||||||    
T  41854987 tatctttgataatgcagtcctagagtcatggtcttcttcaagtatctcatgactctttcgatagcttgccaatgctccatgcttggcctgctcgtaaact 41855086  T
Q  208 tgcataagagtcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacacc 307  Q
    ||||||| ||||||||| | ||| | | ||||||||||||||| ||| || ||||||||||||  ||||||||||||||||||| ||||||| ||||||     
T  41855087 tgcataatagtcccacggcgtagccgatgtcgggtctagtacaatcagtggcatatctgagactgccaatgatgctcgcatattcaatttgtctaacact 41855186  T
Q  308 atttccattgttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtag 407  Q
    || |||| |||||||||| || || |||||| | ||| ||||| | |||||||||||||| |  || |||||||||||||||||||||||||||| ||||    
T  41855187 atctccagtgttcttaaatagcttcacacttgggtcacaaggtgtgctcgcaggtttacaattgaagtaattatatttccttaagatcttctcaacgtag 41855286  T
Q  408 tgagattga 416  Q
    |||||||||    
T  41855287 tgagattga 41855295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 118 - 416
Target Start/End: Complemental strand, 24775047 - 24774749
Alignment:
Q  118 aatgcagtcctaaagtcatagtcctttctaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagag 217  Q
    |||||||||||| |||||| ||| | | ||  |||| ||||||| ||||||| || |||||||||||  |||||||||| || |||||||||||||  ||    
T  24775047 aatgcagtcctagagtcatggtcttctttaaatatctcatgactttttcaatagcttgccaatgctccatgcttggcctgctcgtaaacttgcatagtag 24774948  T
Q  218 tcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattg 317  Q
    ||||||| | ||| | | ||||||||||||||| ||| || ||||||||||||  ||||||||||||||||||| | ||||| |||||| || |||| ||    
T  24774947 tcccacggcgtagccgatgtcgggtctagtacaatcagtggcatatctgagactgccaatgatgctcgcatattcagtttgtctaacactatctccagtg 24774848  T
Q  318 ttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    |||||||| || || |||||||| ||| ||||| | |||||||||||||| || || ||||||||||||||||||||||||| || |||||||||||||    
T  24774847 ttcttaaatagcttcacacttaggtcacaaggtgtgctcgcaggtttacaatcgaagtaattatatttccttaagatcttcttaacgtagtgagattga 24774749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 118 - 416
Target Start/End: Original strand, 42021390 - 42021688
Alignment:
Q  118 aatgcagtcctaaagtcatagtcctttctaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagag 217  Q
    |||||||||||| |||||| ||| | |  | ||||| ||||||| |||| || || |||||||||||  |||||||||| || |||||||||||||| ||    
T  42021390 aatgcagtcctagagtcatggtcttcttcaagtatctcatgactctttcgatagcttgccaatgctccatgcttggcctgctcgtaaacttgcataatag 42021489  T
Q  218 tcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattg 317  Q
    ||||||| | ||| | | ||||||||||||||| ||| || ||||||||||||  ||||||||||||||||||| | ||||| |||||| || |||| ||    
T  42021490 tcccacggcgtagccgatgtcgggtctagtacaatcagtggcatatctgagactgccaatgatgctcgcatattcagtttgtctaacactatctccagtg 42021589  T
Q  318 ttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    |||||||| || || |||||| | ||| ||||| | |||||||||||||| |  || |||||||||||||||||||||||||||| |||||||||||||    
T  42021590 ttcttaaatagcttcacacttgggtcacaaggtgtgctcgcaggtttacaattgaagtaattatatttccttaagatcttctcaacgtagtgagattga 42021688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 150 - 416
Target Start/End: Complemental strand, 17549068 - 17548803
Alignment:
Q  150 tatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagagtcccacgacataggcaaagtcgggtctagtac 249  Q
    |||| ||||||| ||| ||| ||||| |||| ||| || || |  ||||||||||||||  ||||||||| ||||||||||| || ||| ||||||||||    
T  17549068 tatctcatgactcttttaatagcatgtcaattctccttactcgttctacttgtaaacttaaataagagtctcacgacataggtaatgtcaggtctagtac 17548969  T
Q  250 agtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattgttcttaaagagttttacacttagatcataagg 349  Q
    ||| | || ||||  |||| |  ||||||||||| ||||||| | ||||| ||| ||||| || | ||||||| ||||||||||||  ||||||||||||    
T  17548968 agttagtggcatacttgaggct-ccaatgatgcttgcatattcagtttgtctaataccatctctaatgttctttaagagttttacatctagatcataagg 17548870  T
Q  350 tttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    | | || |||||||||||  |||||||||||||||||||||||||||||||||  ||||||||||||    
T  17548869 tgtccttgcaggtttacaaccaaaataattatatttccttaagatcttctcaacatagtgagattga 17548803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 150 - 416
Target Start/End: Original strand, 17506513 - 17506778
Alignment:
Q  150 tatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagagtcccacgacataggcaaagtcgggtctagtac 249  Q
    |||| ||||||| |||| || || |||||||||||  ||||||| || || |||||||||||||  ||||| ||| ||||| | | ||||||||| ||||    
T  17506513 tatctcatgactctttcgatagcttgccaatgctccatgcttggtctgctcgtaaacttgcatagtagtcctacggcatagccgatgtcgggtct-gtac 17506611  T
Q  250 agtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattgttcttaaagagttttacacttagatcataagg 349  Q
    | ||| || ||||||||||||  ||||||||||||||||||| | | ||| |||||| || |||| |||||||||  || || |||||| | ||| ||||    
T  17506612 aatcagtggcatatctgagactgccaatgatgctcgcatattcagtctgtctaacactatctccagtgttcttaattagcttcacacttgggtcacaagg 17506711  T
Q  350 tttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    | | |||||||||||||| || || ||||||||||||||||||||||||||||  ||||||||||||    
T  17506712 tgtgctcgcaggtttacaatcgaagtaattatatttccttaagatcttctcaacatagtgagattga 17506778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 163 - 416
Target Start/End: Complemental strand, 25687517 - 25687265
Alignment:
Q  163 tttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagagtcccacgacataggcaaagtcgggtctagtacagtcactgacata 262  Q
    ||||||| |||||  || |||| |||| ||||||| ||||||||||| |||||||||||||| ||||| ||| |||| | |||||||| |||  ||||||    
T  25687517 tttcaatagcatgaaaaagctctttgcatggcctatttgtaaacttgaataagagtcccacgtcatag-caatgtcgaggctagtacaatcaacgacata 25687419  T
Q  263 tctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattgttcttaaagagttttacacttagatcataaggtttactcgcaggt 362  Q
    ||  ||    |||||||||||| |||||| | ||||| ||||| ||| |||  ||||||| |||||||||||| || ||||||||||| | || | ||||    
T  25687418 tcataggttgccaatgatgctcacatattcactttgtctaacatcatatccggtgttcttgaagagttttacatttggatcataaggtgtgcttgtaggt 25687319  T
Q  363 ttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    ||||| | ||| ||||| ||||||||||| ||||||||||| ||||||||||||    
T  25687318 ttacaattaaagtaattttatttccttaaaatcttctcaatatagtgagattga 25687265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 190 - 347
Target Start/End: Original strand, 25521960 - 25522118
Alignment:
Q  190 ttggcctacttgtaaacttgcataagagtcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgag-accaccaatgatgctcgcat 288  Q
    |||| ||||| ||||||||||| |||||| ||||| ||||| |||  ||||||||| |||| ||| || | |||||||| ||  ||||||||||||||||    
T  25521960 ttggtctactagtaaacttgcacaagagttccacggcatagacaatatcgggtctaatacattcagtggcttatctgaggactgccaatgatgctcgcat 25522059  T
Q  289 atttaatttgtataacaccatttccattgttcttaaagagttttacacttagatcataa 347  Q
    |||  |||||| |||| |||| || | ||||||| ||||||||||||||| ||||||||    
T  25522060 attctatttgtctaactccatctcaagtgttcttgaagagttttacacttggatcataa 25522118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 357 - 416
Target Start/End: Complemental strand, 13586170 - 13586111
Alignment:
Q  357 gcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    ||||||||||| |||| ||| ||||||||||||||||||||||||| |||||||||||||    
T  13586170 gcaggtttacaatcaagatatttatatttccttaagatcttctcaacgtagtgagattga 13586111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 28221795 - 28221844
Alignment:
Q  49 taatctttaagcaatccacggatctgttctcacacgagtggatatatctg 98  Q
    ||||||||||||||||  |||||| |||||||| | ||||||||||||||    
T  28221795 taatctttaagcaatctgcggatcggttctcacgcaagtggatatatctg 28221844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 119; Significance: 2e-60; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 118 - 416
Target Start/End: Complemental strand, 17430 - 17132
Alignment:
Q  118 aatgcagtcctaaagtcatagtcctttctaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagag 217  Q
    |||||||||||| |||||| ||| | |  | ||||| ||||||| |||| || || |||||||||||  |||||||||| || |||||||||||||| ||    
T  17430 aatgcagtcctagagtcatggtcttcttcaagtatctcatgactctttcgatagcttgccaatgctccatgcttggcctgctcgtaaacttgcataatag 17331  T
Q  218 tcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattg 317  Q
    ||||||| | ||| | | ||||||||||||||| ||| || ||||||||||||  ||||||||||||||||||| | ||||| |||||| || |||| ||    
T  17330 tcccacggcgtagccgatgtcgggtctagtacaatcagtggcatatctgagactgccaatgatgctcgcatattcagtttgtctaacactatctccagtg 17231  T
Q  318 ttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    |||||||| || || |||||| | ||| ||||| | |||||||||||||| || || |||||||||||||||||||||||||||| |||||||||||||    
T  17230 ttcttaaatagcttcacacttgggtcacaaggtgtgctcgcaggtttacaatcgaagtaattatatttccttaagatcttctcaacgtagtgagattga 17132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0165 (Bit Score: 119; Significance: 2e-60; HSPs: 1)
Name: scaffold0165
Description:

Target: scaffold0165; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 118 - 416
Target Start/End: Original strand, 13391 - 13689
Alignment:
Q  118 aatgcagtcctaaagtcatagtcctttctaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagag 217  Q
    |||||||||||| |||||| ||| | |  | ||||| ||||||| |||| || || |||||||||||  |||||||||| || |||||||||||||| ||    
T  13391 aatgcagtcctagagtcatggtcttcttcaagtatctcatgactctttcgatagcttgccaatgctccatgcttggcctgctcgtaaacttgcataatag 13490  T
Q  218 tcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattg 317  Q
    ||||||| | ||| | | ||||||||||||||| ||| || ||||||||||||  ||||||||||||||||||| | ||||| |||||| || |||| ||    
T  13491 tcccacggcgtagccgatgtcgggtctagtacaatcagtggcatatctgagactgccaatgatgctcgcatattcagtttgtctaacactatctccagtg 13590  T
Q  318 ttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    |||||||| || || |||||| | ||| ||||| | |||||||||||||| || || |||||||||||||||||||||||||||| |||||||||||||    
T  13591 ttcttaaatagcttcacacttgggtcacaaggtgtgctcgcaggtttacaatcgaagtaattatatttccttaagatcttctcaacgtagtgagattga 13689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 119; Significance: 2e-60; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 118 - 416
Target Start/End: Original strand, 27951 - 28249
Alignment:
Q  118 aatgcagtcctaaagtcatagtcctttctaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagag 217  Q
    |||||||||||| |||||| ||| | |  | ||||| ||||||| |||| || || |||||||||||  |||||||||| || |||||||||||||| ||    
T  27951 aatgcagtcctagagtcatggtcttcttcaagtatctcatgactctttcgatagcttgccaatgctccatgcttggcctgctcgtaaacttgcataatag 28050  T
Q  218 tcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattg 317  Q
    ||||||| | ||| | | ||||||||||||||| ||| || ||||||||||||  ||||||||||||||||||| | ||||| |||||| || |||| ||    
T  28051 tcccacggcgtagccgatgtcgggtctagtacaatcagtggcatatctgagactgccaatgatgctcgcatattcagtttgtctaacactatctccagtg 28150  T
Q  318 ttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    |||||||| || || |||||| | ||| ||||| | |||||||||||||| || || |||||||||||||||||||||||||||| |||||||||||||    
T  28151 ttcttaaatagcttcacacttgggtcacaaggtgtgctcgcaggtttacaatcgaagtaattatatttccttaagatcttctcaacgtagtgagattga 28249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 2e-60; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 118 - 416
Target Start/End: Original strand, 33239581 - 33239879
Alignment:
Q  118 aatgcagtcctaaagtcatagtcctttctaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagag 217  Q
    |||||||||||| |||||| ||| | |  | ||||| ||||||| |||| || || |||||||||||  |||||||||| || |||||||||||||| ||    
T  33239581 aatgcagtcctagagtcatggtcttcttcaagtatctcatgactctttcgatagcttgccaatgctccatgcttggcctgctcgtaaacttgcataatag 33239680  T
Q  218 tcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattg 317  Q
    ||||||| | ||| | | ||||||||||||||| ||| || ||||||||||||  ||||||||||||||||||| | ||||| |||||| || |||| ||    
T  33239681 tcccacggcgtagccgatgtcgggtctagtacaatcagtggcatatctgagactgccaatgatgctcgcatattcagtttgtctaacactatctccagtg 33239780  T
Q  318 ttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    |||||||| || || |||||| | ||| ||||| | |||||||||||||| || || |||||||||||||||||||||||||||| |||||||||||||    
T  33239781 ttcttaaatagcttcacacttgggtcacaaggtgtgctcgcaggtttacaatcgaagtaattatatttccttaagatcttctcaacgtagtgagattga 33239879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 118 - 416
Target Start/End: Original strand, 47995378 - 47995676
Alignment:
Q  118 aatgcagtcctaaagtcatagtcctttctaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagag 217  Q
    |||||||||||| |||||| ||| | |  | ||||| ||||||| |||| || || |||||||||||  |||||||||| || |||||||||||||| ||    
T  47995378 aatgcagtcctagagtcatggtcttcttcaagtatctcatgactctttcgatagcttgccaatgctccatgcttggcctgctcgtaaacttgcataatag 47995477  T
Q  218 tcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattg 317  Q
    ||||||| | ||| | | ||||||||||||||| ||| || ||||||||||||  ||||||||||||||||||| | ||||| |||||| || |||| ||    
T  47995478 tcccacggcgtagccgatgtcgggtctagtacaatcagtggcatatctgagactgccaatgatgctcgcatattcagtttgtctaacactatctccagtg 47995577  T
Q  318 ttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    |||||||| || || |||||| | ||| ||||| | |||||||||||||| || || |||||||||||||||||||||||||||| |||||||||||||    
T  47995578 ttcttaaatagcttcacacttgggtcacaaggtgtgctcgcaggtttacaatcgaagtaattatatttccttaagatcttctcaacgtagtgagattga 47995676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 150 - 416
Target Start/End: Original strand, 17497410 - 17497676
Alignment:
Q  150 tatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagagtcccacgacataggcaaagtcgggtctagtac 249  Q
    |||| ||||||| ||||||| || |||| ||||||  |||||||||| ||||||||||||||||  ||||||||| | ||| | | ||| |||||| |||    
T  17497410 tatctcatgactctttcaatagcttgccgatgctccatgcttggcctgcttgtaaacttgcatagtagtcccacggcgtagccgatgtcaggtctaatac 17497509  T
Q  250 agtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattgttcttaaagagttttacacttagatcataagg 349  Q
    | ||| || ||||||||||||   |||||||||||||||||| | ||||| |||||| || || | |||||||||| || || |||||| | ||| ||||    
T  17497510 aatcagtggcatatctgagactgtcaatgatgctcgcatattcagtttgtctaacactatctcaagtgttcttaaatagcttcacacttgggtcacaagg 17497609  T
Q  350 tttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    | | ||||||||||| || || || || ||||||||||||||||||||||||| |||||||||||||    
T  17497610 tgtgctcgcaggttttcaatcgaagtagttatatttccttaagatcttctcaacgtagtgagattga 17497676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 150 - 416
Target Start/End: Complemental strand, 17555804 - 17555538
Alignment:
Q  150 tatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagagtcccacgacataggcaaagtcgggtctagtac 249  Q
    |||| ||||||| ||||||| || |||| ||||||  |||||||||| ||||||||||||||||  ||||||||| | ||| | | ||| |||||| |||    
T  17555804 tatctcatgactctttcaatagcttgccgatgctccatgcttggcctgcttgtaaacttgcatagtagtcccacggcgtagccgatgtcaggtctaatac 17555705  T
Q  250 agtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattgttcttaaagagttttacacttagatcataagg 349  Q
    | ||| || ||||||||||||   |||||||||||||||||| | ||||| |||||| || || | |||||||||| || || |||||| | ||| ||||    
T  17555704 aatcagtggcatatctgagactgtcaatgatgctcgcatattcagtttgtctaacactatctcaagtgttcttaaatagcttcacacttgggtcacaagg 17555605  T
Q  350 tttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    | | ||||||||||| || || || || ||||||||||||||||||||||||| |||||||||||||    
T  17555604 tgtgctcgcaggttttcaatcgaagtagttatatttccttaagatcttctcaacgtagtgagattga 17555538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 150 - 416
Target Start/End: Original strand, 15235065 - 15235330
Alignment:
Q  150 tatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagagtcccacgacataggcaaagtcgggtctagtac 249  Q
    |||| ||||||| ||| ||| ||||| |||| ||| || || |  ||||||||||||||  ||||||||| ||||||||||| || ||| ||||||||||    
T  15235065 tatctcatgactcttttaatagcatgtcaattctccttactcgttctacttgtaaacttaaataagagtctcacgacataggtaatgtcaggtctagtac 15235164  T
Q  250 agtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattgttcttaaagagttttacacttagatcataagg 349  Q
    | | | || ||||  |||| |  ||||||||||| ||||||| | ||||| ||| ||||| || | ||||||| ||||||||||||  ||||||||||||    
T  15235165 atttagtggcatacttgaggct-ccaatgatgcttgcatattcagtttgtctaataccatctctaatgttctttaagagttttacatctagatcataagg 15235263  T
Q  350 tttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    | | || |||||||||||  |||||||||||||||||||||||||||||||||  ||||||||||||    
T  15235264 tgtccttgcaggtttacaaccaaaataattatatttccttaagatcttctcaacatagtgagattga 15235330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 118 - 402
Target Start/End: Original strand, 14784909 - 14785191
Alignment:
Q  118 aatgcagtcctaaagtcatagtcctttctaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagag 217  Q
    |||||||||||| || ||||||| |||| || |||| ||||||| ||| |||  |||| |||| ||| || || |   |||||||||||||  |||||||    
T  14784909 aatgcagtcctagag-catagtcatttcgagatatctcatgactcttttaataacatgtcaattctccttactcgttttacttgtaaacttaaataagag 14785007  T
Q  218 tcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattg 317  Q
    || || |||||||| || ||| ||||||||||| | | || ||||  |||| |  ||||||||||| ||||||| | ||||| ||| ||||| |||| ||    
T  14785008 tctcatgacataggtaatgtcaggtctagtacatttagtggcatacttgaggct-ccaatgatgcttgcatattcagtttgtctaataccatctccaatg 14785106  T
Q  318 ttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaa 402  Q
    ||||| ||||||||||||  ||||||||||||| | ||  ||| |||||||||||||||||||||||||||||||||||||||||    
T  14785107 ttctttaagagttttacatctagatcataaggtgtccttacagatttacagtcaaaataattatatttccttaagatcttctcaa 14785191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 394
Target Start/End: Original strand, 15981051 - 15981171
Alignment:
Q  274 caatgatgctcgcatatttaatttgtataacaccatttccattgttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaa 373  Q
    |||||||||| ||||||||  ||||| ||||||  | || | ||||||||| ||||||||||||| || | |||||| | || ||| ||||||| |||||    
T  15981051 caatgatgcttgcatattttgtttgtttaacactgtctctagtgttcttaatgagttttacacttggaacgtaaggtgtgcttgcatgtttacaatcaaa 15981150  T
Q  374 ataattatatttccttaagat 394  Q
     ||||||||||||||||||||    
T  15981151 gtaattatatttccttaagat 15981171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 21221698 - 21221649
Alignment:
Q  198 cttgtaaacttgcataagagtcccacgacataggcaaagtcgggtctagt 247  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  21221698 cttgtaaacttgcataagagttccacgacgtaggcaatgtcgggtctagt 21221649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 416
Target Start/End: Complemental strand, 21221552 - 21221476
Alignment:
Q  340 gatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    ||||||||||  | || ||| |||||| |||| |||||||||||||| |||| |||||||||||   ||||||||||    
T  21221552 gatcataaggcatgcttgcaagtttacggtcagaataattatatttctttaaaatcttctcaatactgtgagattga 21221476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 2e-60; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 118 - 416
Target Start/End: Original strand, 27712849 - 27713147
Alignment:
Q  118 aatgcagtcctaaagtcatagtcctttctaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagag 217  Q
    |||||||||||| |||||| ||| | |  | ||||| ||||||| |||| || || |||||||||||  |||||||||| || |||||||||||||| ||    
T  27712849 aatgcagtcctagagtcatggtcttcttcaagtatctcatgactctttcgatagcttgccaatgctccatgcttggcctgctcgtaaacttgcataatag 27712948  T
Q  218 tcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattg 317  Q
    ||||||| | ||| | | ||||||||||||||| ||| || ||||||||||||  ||||||||||||||||||| | ||||| |||||| || |||| ||    
T  27712949 tcccacggcgtagccgatgtcgggtctagtacaatcagtggcatatctgagactgccaatgatgctcgcatattcagtttgtctaacactatctccagtg 27713048  T
Q  318 ttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    |||||||| || || |||||| | ||| ||||| | |||||||||||||| || || |||||||||||||||||||||||||||| |||||||||||||    
T  27713049 ttcttaaatagcttcacacttgggtcacaaggtgtgctcgcaggtttacaatcgaagtaattatatttccttaagatcttctcaacgtagtgagattga 27713147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 103 - 416
Target Start/End: Complemental strand, 37408120 - 37407807
Alignment:
Q  103 cagggtatctttaagaatgcagtcctaaagtcatagtcctttctaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgt 202  Q
    |||| ||||| ||| |||||||||||| |||||| ||| | |  | ||||| ||||||| |||| || || |||||||||||  |||||||||| || ||    
T  37408120 caggatatctctaataatgcagtcctagagtcatggtcttcttcaagtatctcatgactctttcgatagcttgccaatgctccatgcttggcctgctcgt 37408021  T
Q  203 aaacttgcataagagtcccacgacataggcaaagtcgggtctagtacagtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtata 302  Q
    |||||||||||| ||||||||| | ||| | | ||| ||||||||||| ||| || ||||||||||||   |||||||||||||||||| | ||||| ||    
T  37408020 aaacttgcataatagtcccacggcgtagccgatgtcaggtctagtacaatcagtggcatatctgagactgtcaatgatgctcgcatattcagtttgtcta 37407921  T
Q  303 acaccatttccattgttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaa 402  Q
    |||| || |||| |||||||||| || || |||||| | ||| ||||| | |||||||||||||| |  || ||||||||||||||||||||||||||||    
T  37407920 acactatctccagtgttcttaaatagcttcacacttgggtcacaaggtgtgctcgcaggtttacaattgaagtaattatatttccttaagatcttctcaa 37407821  T
Q  403 tgtagtgagattga 416  Q
     |||||||||||||    
T  37407820 cgtagtgagattga 37407807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 150 - 416
Target Start/End: Original strand, 5726555 - 5726821
Alignment:
Q  150 tatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagagtcccacgacataggcaaagtcgggtctagtac 249  Q
    |||| ||||||| |||| || || |||||||||||  |||||||||| || |||||||||||||  ||||||||| ||||| | | ||||||||||||||    
T  5726555 tatctcatgactctttcgatagcttgccaatgctccatgcttggcctgctcgtaaacttgcatagtagtcccacggcatagccgatgtcgggtctagtac 5726654  T
Q  250 agtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattgttcttaaagagttttacacttagatcataagg 349  Q
    | ||| || ||||||||||||  ||||||||| ||||||||| | ||||| |||||| || || | |||||||||| || || |||||| | ||| ||||    
T  5726655 aatcagtggcatatctgagactgccaatgatgttcgcatattcagtttgtctaacactatctcgaatgttcttaaatagcttcacacttgggtcacaagg 5726754  T
Q  350 tttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    | | |||| ||||||||| || || |||||||||||||||||||||||||||| |||||||||||||    
T  5726755 tgtgctcgtaggtttacaatcgaagtaattatatttccttaagatcttctcaacgtagtgagattga 5726821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 273 - 388
Target Start/End: Original strand, 16037963 - 16038077
Alignment:
Q  273 ccaatgatgctcgcatatttaatttgtataacaccatttccattgttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaa 372  Q
    |||||||||||||||||||  |||||| ||||||||| || |  |||||| || |||||||||||| ||||||||||| | || ||| |||||||||| |    
T  16037963 ccaatgatgctcgcatattctatttgtctaacaccatctcaagagttcttgaaaagttttacacttggatcataaggtgtgcttgcaagtttacagtc-a 16038061  T
Q  373 aataattatatttcct 388  Q
    |||||||| |||||||    
T  16038062 aataattacatttcct 16038077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 273 - 402
Target Start/End: Original strand, 11811209 - 11811337
Alignment:
Q  273 ccaatgatgctcgcatatttaatttgtataacaccatttccattgttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaa 372  Q
    |||||||||||||||||||   ||||| |||| |||| || | ||||||| |||| ||||||| || |||| |||| | | || ||| ||||||| || |    
T  11811209 ccaatgatgctcgcatattctgtttgtctaactccatctcaagtgttcttgaagatttttacagttggatcttaagatatgcttgcaagtttacaatc-a 11811307  T
Q  373 aataattatatttccttaagatcttctcaa 402  Q
    |||||||| |||||||||||||||| ||||    
T  11811308 aataattacatttccttaagatcttatcaa 11811337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 416
Target Start/End: Complemental strand, 17133578 - 17133531
Alignment:
Q  369 tcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    ||||| ||||||||||||||||||||||||||||  || |||||||||    
T  17133578 tcaaagtaattatatttccttaagatcttctcaacataatgagattga 17133531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 150 - 416
Target Start/End: Original strand, 1 - 267
Alignment:
Q  150 tatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagagtcccacgacataggcaaagtcgggtctagtac 249  Q
    |||| ||||||| |||| || || |||||||||||  |||||||||| || |||||||||||||| ||||||||| | ||| | | ||| ||||||||||    
T  1 tatctcatgactctttcgatagcttgccaatgctccatgcttggcctgctcgtaaacttgcataatagtcccacggcgtagccgatgtcaggtctagtac 100  T
Q  250 agtcactgacatatctgagaccaccaatgatgctcgcatatttaatttgtataacaccatttccattgttcttaaagagttttacacttagatcataagg 349  Q
    | ||| || ||||||||||||   |||||||||||||||||| | ||||| |||||| || |||| |||||||||| || || |||||| | ||| ||||    
T  101 aatcagtggcatatctgagactgtcaatgatgctcgcatattcagtttgtctaacactatctccagtgttcttaaatagcttcacacttgggtcacaagg 200  T
Q  350 tttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgagattga 416  Q
    | | |||||||||||||| |  || |||||||||||||||||||||||||||| |||||||||||||    
T  201 tgtgctcgcaggtttacaatagaagtaattatatttccttaagatcttctcaacgtagtgagattga 267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 316 - 412
Target Start/End: Complemental strand, 32168 - 32072
Alignment:
Q  316 tgttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaaataattatatttccttaagatcttctcaatgtagtgaga 412  Q
    |||||||||| |||||||||||| ||||||||||| | || ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  32168 tgttcttaaaaagttttacacttggatcataaggtgtgcttgcaggtttacaatcaaaataattatatttccttaagatcttctcaacgtagtgaga 32072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 118 - 225
Target Start/End: Complemental strand, 32284 - 32177
Alignment:
Q  118 aatgcagtcctaaagtcatagtcctttctaggtatcccatgactatttcaatcgcatgccaatgctcattgcttggcctacttgtaaacttgcataagag 217  Q
    ||||||| || ||| ||||||||| ||  ||||||| || |||| | ||||| |||||||||||||| |||||||||||||||||||| |||||||||||    
T  32284 aatgcagacccaaattcatagtccctttcaggtatctcacgactctctcaattgcatgccaatgctccttgcttggcctacttgtaaatttgcataagag 32185  T
Q  218 tcccacga 225  Q
    ||||||||    
T  32184 tcccacga 32177  T

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Target: scaffold0468 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 273 - 414
Target Start/End: Complemental strand, 1241 - 1101
Alignment:
Q  273 ccaatgatgctcgcatatttaatttgtataacaccatttccattgttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaa 372  Q
    ||||||||||| |||||||  |||||| ||||||||| || | |||| || || |||||||||||||||||||||||| | || ||| ||||| |||| |    
T  1241 ccaatgatgcttgcatattctatttgtctaacaccatctcaagtgttattgaaaagttttacacttagatcataaggtgtgcttgcaagtttaaagtc-a 1143  T
Q  373 aataattatatttccttaagatcttctcaatgtagtgagatt 414  Q
    |||||||| |||| |||||||| ||||||| || ||||||||    
T  1142 aataattacattttcttaagatattctcaacgttgtgagatt 1101  T

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Target: scaffold0061 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 273 - 402
Target Start/End: Complemental strand, 47586 - 47458
Alignment:
Q  273 ccaatgatgctcgcatatttaatttgtataacaccatttccattgttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaa 372  Q
    |||||||||||| ||||||   ||||| ||||||||| || | ||||||| || |||||||||||| ||| |||| || |||| ||| |||||||||| |    
T  47586 ccaatgatgctcacatattctgtttgtctaacaccatctcaagtgttcttgaaaagttttacacttggatgataaagtgtactagcaagtttacagtc-a 47488  T
Q  373 aataattatatttccttaagatcttctcaa 402  Q
    |||||||| ||||||||||||| |||||||    
T  47487 aataattacatttccttaagatattctcaa 47458  T

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Target: scaffold0017 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 273 - 402
Target Start/End: Original strand, 151047 - 151175
Alignment:
Q  273 ccaatgatgctcgcatatttaatttgtataacaccatttccattgttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaa 372  Q
    |||||||||||| ||||||   ||||| ||||||||| || | ||||||| || |||||||||||| ||| |||| || |||| ||| |||||||||| |    
T  151047 ccaatgatgctcacatattctgtttgtctaacaccatctcaagtgttcttgaaaagttttacacttggatgataaagtgtactagcaagtttacagtc-a 151145  T
Q  373 aataattatatttccttaagatcttctcaa 402  Q
    |||||||| ||||||||||||| |||||||    
T  151146 aataattacatttccttaagatattctcaa 151175  T

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Target: scaffold0015 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 272 - 392
Target Start/End: Complemental strand, 212444 - 212325
Alignment:
Q  272 accaatgatgctcgcatatttaatttgtataacaccatttccattgttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtca 371  Q
    |||| |||||||||||||||  |||||| ||||||||| || | ||||||| || ||||||||||||||||||||| || | || ||| ||||| ||||     
T  212444 accattgatgctcgcatattctatttgtctaacaccatctcaagtgttcttgaaaagttttacacttagatcataaagtgtgctagcaagtttatagtc- 212346  T
Q  372 aaataattatatttccttaag 392  Q
    ||||||||| |||||||||||    
T  212345 aaataattacatttccttaag 212325  T

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Target: scaffold0070 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 273 - 402
Target Start/End: Original strand, 60856 - 60984
Alignment:
Q  273 ccaatgatgctcgcatatttaatttgtataacaccatttccattgttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaa 372  Q
    |||||||||||| ||||||   ||||| ||||||||| || | ||||||| || |||||||||||| |||||||| || | || ||| ||||||| || |    
T  60856 ccaatgatgctcacatattctgtttgtctaacaccatctcaagtgttcttgaaaagttttacacttggatcataaagtgtgctagcaagtttacaatc-a 60954  T
Q  373 aataattatatttccttaagatcttctcaa 402  Q
    |||||||| ||||||||||||| |||||||    
T  60955 aataattagatttccttaagatattctcaa 60984  T

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Target: scaffold0070; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 273 - 402
Target Start/End: Original strand, 65058 - 65186
Alignment:
Q  273 ccaatgatgctcgcatatttaatttgtataacaccatttccattgttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaa 372  Q
    |||||||||||| ||||||   ||||| ||||||||| || | ||||||| || |||||||||||| |||||||| || | || ||| ||||||| || |    
T  65058 ccaatgatgctcacatattctgtttgtctaacaccatctcaagtgttcttgaaaagttttacacttggatcataaagtgtgctagcaagtttacaatc-a 65156  T
Q  373 aataattatatttccttaagatcttctcaa 402  Q
    |||||||| ||||||||||||| |||||||    
T  65157 aataattagatttccttaagatattctcaa 65186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 274 - 402
Target Start/End: Complemental strand, 50550 - 50423
Alignment:
Q  274 caatgatgctcgcatatttaatttgtataacaccatttccattgttcttaaagagttttacacttagatcataaggtttactcgcaggtttacagtcaaa 373  Q
    ||||||||||| ||||||   ||||| ||||||||| || | |||||||||| ||||||| ||||  ||||||| || |  | ||| |||||||||| ||    
T  50550 caatgatgctcacatattatgtttgtctaacaccatctcaagtgttcttaaaaagttttagacttgaatcataaagtgtgttagcaagtttacagtc-aa 50452  T
Q  374 ataattatatttccttaagatcttctcaa 402  Q
    ||||||| ||||||||||||| |||||||    
T  50451 ataattacatttccttaagatattctcaa 50423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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