View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0942_low_92 (Length: 307)

Name: NF0942_low_92
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0942_low_92
NF0942_low_92
[»] chr8 (1 HSPs)
chr8 (16-307)||(7542230-7542519)


Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 307
Target Start/End: Original strand, 7542230 - 7542519
Alignment:
Q  16 atccacaaaccctggaagtggtgacttgggacacatcaaaggttttgatgttaaggacactgaagaagagttgtattcaccatccatttgaaatttctac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7542230 atccacaaaccctggaagtggtgacttgggacacatcaaaggtttcgatgttaaggacactgtagaagagttgtattcaccatccatttgaaatttctac 7542329  T
Q  116 aacaatgaacaaatgcaatggctatggttgcagagtnnnnnnnnngtgaaacttgattgttggttagttgaaagttagaaacttgtgaaatgggttagct 215  Q
    ||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7542330 aacaatgaacaaatgcaatggctatggttgcagagtaaaaaaa--gtgaaacttgattgttggttagttgaaagttagaaacttgtgaaatgggttagct 7542427  T
Q  216 ttatacttgcacatgagcacttaaaattggattggttgagattttcctgagaaagtgacaagagggtaacaaagcacacgtgactgtcacac 307  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7542428 ttgtacttgcacatgagcacttaaaattggattggttgagattttcctgagaaagtgacaagagggtaacgaagcacacgtgactgtcacac 7542519  T

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