View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0942_low_93 (Length: 304)

Name: NF0942_low_93
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0942_low_93
NF0942_low_93
[»] chr2 (15 HSPs)
chr2 (8-304)||(28215701-28215997)
chr2 (63-195)||(28220224-28220356)
chr2 (159-256)||(32309070-32309167)
chr2 (159-256)||(32799899-32799996)
chr2 (159-251)||(32565668-32565760)
chr2 (159-251)||(32806853-32806945)
chr2 (159-251)||(32815290-32815382)
chr2 (20-145)||(32309226-32309354)
chr2 (20-145)||(32565481-32565609)
chr2 (20-145)||(32799712-32799840)
chr2 (20-145)||(32806666-32806794)
chr2 (20-145)||(32815103-32815231)
chr2 (8-84)||(28220447-28220523)
chr2 (216-291)||(28220150-28220227)
chr2 (214-243)||(28216011-28216040)
[»] chr6 (2 HSPs)
chr6 (159-251)||(301229-301321)
chr6 (20-160)||(301362-301500)


Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 8 - 304
Target Start/End: Original strand, 28215701 - 28215997
Alignment:
Q  8 cgaagaatattctcagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaatac 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28215701 cgaacaatattctcagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaatac 28215800  T
Q  108 cagctaacttgactgaacgaaaagaagtatgatagaaattaaatgaagttgttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagat 207  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28215801 cagctaacttcactgaacgaaaagaagtatgatagaaattaaatgaagttgttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagat 28215900  T
Q  208 ccatgtgttgaagatgaagaatctcctcattttcttgatgatgatgatgctggagtgaaggagaagagaatagaagcgggaaagtgaagacttgttt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28215901 ccatgtgttgaagatgaagaatctcctcattttcttgatgatgatgatgctggagtgaaggagaagagaatagaagcaggaaagtgaagacttgttt 28215997  T

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Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 63 - 195
Target Start/End: Complemental strand, 28220356 - 28220224
Alignment:
Q  63 tggaaccatctctgatactttcactgaaatcaaacggaaaaataccagctaacttgactgaacgaaaagaagtatgatagaaattaaatgaagttgttct 162  Q
    |||||||||||||||| |||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28220356 tggaaccatctctgattctttgattgaaatcaaacggaaaaataccagctaacttcactgaacgaaaagaagtatgatagaaattaaatgaagttgttct 28220257  T
Q  163 gagagagagaagaacaggaaggactgcaatgaa 195  Q
    ||||||||||||||||| |||||||||||||||    
T  28220256 gagagagagaagaacagaaaggactgcaatgaa 28220224  T

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Target: chr2; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 159 - 256
Target Start/End: Complemental strand, 32309167 - 32309070
Alignment:
Q  159 ttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatgaagaatctcctcattttcttgatgatgatgatg 256  Q
    |||||||||||| |||||||||||||| | ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  32309167 ttctgagagagacaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatgaagaatctcctcattttcttgatgatgaagatg 32309070  T

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Target: chr2; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 159 - 256
Target Start/End: Original strand, 32799899 - 32799996
Alignment:
Q  159 ttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatgaagaatctcctcattttcttgatgatgatgatg 256  Q
    ||||||||||||||||||||||||||| | ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  32799899 ttctgagagagagaagaacaggaaggaatacaatgaatgcaactatgaaccatgggttgaagatgaagaatctcctcattttcttgatgatgaagatg 32799996  T

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Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 159 - 251
Target Start/End: Original strand, 32565668 - 32565760
Alignment:
Q  159 ttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatgaagaatctcctcattttcttgatgatga 251  Q
    |||||||||||| |||||||||||||| | ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  32565668 ttctgagagagacaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatgaagaatctcctcattttcttgatgatga 32565760  T

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Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 159 - 251
Target Start/End: Original strand, 32806853 - 32806945
Alignment:
Q  159 ttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatgaagaatctcctcattttcttgatgatga 251  Q
    ||||||||||| ||||||||||||||| | ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  32806853 ttctgagagagggaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatgaagaatctcctcattttcttgatgatga 32806945  T

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Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 159 - 251
Target Start/End: Original strand, 32815290 - 32815382
Alignment:
Q  159 ttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatgaagaatctcctcattttcttgatgatga 251  Q
    |||||||||||| |||||||||||||| | ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  32815290 ttctgagagagacaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatgaagaatctcctcattttcttgatgatga 32815382  T

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Target: chr2; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 32309354 - 32309226
Alignment:
Q  20 tcagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaata---ccagctaact 116  Q
    ||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| |||| | |||||||||| |||||| ||    | |||||      
T  32309354 tcagcttgagggcaagaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaa 32309255  T
Q  117 tgactgaacgaaaagaagtatgatagaaa 145  Q
    ||||||||||||||||||||||| |||||    
T  32309254 tgactgaacgaaaagaagtatgagagaaa 32309226  T

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Target: chr2; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 32565481 - 32565609
Alignment:
Q  20 tcagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaata---ccagctaact 116  Q
    ||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| |||| | |||||||||| |||||| ||    | |||||      
T  32565481 tcagcttgagggcaagaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaa 32565580  T
Q  117 tgactgaacgaaaagaagtatgatagaaa 145  Q
    ||||||||||||||||||||||| |||||    
T  32565581 tgactgaacgaaaagaagtatgagagaaa 32565609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 32799712 - 32799840
Alignment:
Q  20 tcagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaata---ccagctaact 116  Q
    ||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| |||| | |||||||||| |||||| ||    | |||||      
T  32799712 tcagcttgagggcaagaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaa 32799811  T
Q  117 tgactgaacgaaaagaagtatgatagaaa 145  Q
    ||||||||||||||||||||||| |||||    
T  32799812 tgactgaacgaaaagaagtatgagagaaa 32799840  T

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Target: chr2; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 32806666 - 32806794
Alignment:
Q  20 tcagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaata---ccagctaact 116  Q
    ||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| |||| | |||||||||| |||||| ||    | |||||      
T  32806666 tcagcttgagggcaagaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaa 32806765  T
Q  117 tgactgaacgaaaagaagtatgatagaaa 145  Q
    ||||||||||||||||||||||| |||||    
T  32806766 tgactgaacgaaaagaagtatgagagaaa 32806794  T

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Target: chr2; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 32815103 - 32815231
Alignment:
Q  20 tcagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaata---ccagctaact 116  Q
    ||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| |||| | |||||||||| |||||| ||    | |||||      
T  32815103 tcagcttgagggcaagaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaa 32815202  T
Q  117 tgactgaacgaaaagaagtatgatagaaa 145  Q
    ||||||||||||||||||||||| |||||    
T  32815203 tgactgaacgaaaagaagtatgagagaaa 32815231  T

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Target: chr2; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 28220523 - 28220447
Alignment:
Q  8 cgaagaatattctcagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttc 84  Q
    |||| |||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||    
T  28220523 cgaacaatattctcagcttgagggcaagaaaccttatagaaattatattgaagattggaaccatctctgattctttc 28220447  T

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Target: chr2; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 291
Target Start/End: Complemental strand, 28220227 - 28220150
Alignment:
Q  216 tgaagatgaagaatctcctcattttcttgatgatgatgatgctggagtgaaggagaagagaat--agaagcgggaaag 291  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||| ||  |||||||||||||    
T  28220227 tgaagatgaagattctcctcattttcttgatgataatgatgctggattgaaggagaagaggataaagaagcgggaaag 28220150  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 243
Target Start/End: Original strand, 28216011 - 28216040
Alignment:
Q  214 gttgaagatgaagaatctcctcattttctt 243  Q
    ||||||||||||||||||||||||||||||    
T  28216011 gttgaagatgaagaatctcctcattttctt 28216040  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 301321 - 301229
Alignment:
Q  159 ttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatgaagaatctcctcattttcttgatgatga 251  Q
    |||||| |||||||||||| ||||||||| ||||||||||||||| || ||||| |||||||||||||||||| |||||||||||||||||||    
T  301321 ttctgaaagagagaagaacgggaaggactacaatgaatgcaactatgaaccatgggttgaagatgaagaatcttctcattttcttgatgatga 301229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 301500 - 301362
Alignment:
Q  20 tcagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaataccagctaacttga 119  Q
    ||||||| ||||| ||||||| |||||||||||||| |||||||||||||||||||||| |||| | |||||||||| |||||| ||   |||||| |||    
T  301500 tcagcttgagggctagaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctaacgtga 301401  T
Q  120 ctgaacgaaaagaagtatgatagaaattaaatgaagttgtt 160  Q
    |||||| |||||  |||||| |||||  | |||||||||||    
T  301400 ctgaaccaaaag--gtatgagagaaagaagatgaagttgtt 301362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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