View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_low_98 (Length: 296)
Name: NF0942_low_98
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_98 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 70 - 296
Target Start/End: Complemental strand, 6317983 - 6317756
Alignment:
| Q |
70 |
actcttaacctccataactttgtccactcccctggttttctcaagtttacataaatcatatgaccatatttcactgatcaagtttcctcttggaacaaca |
169 |
Q |
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| T |
6317983 |
actcttaacctccataactttgtccactcccctggttttctcaagtttacataaatcatatgaccatatttcactgatcaagtttcctcttggaacaaca |
6317884 |
T |
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| Q |
170 |
acaccaaaaccag-atttagcttcactcattaatcaactcagttcttcatgatatcaaattggaagtttcctccaagaattatttattaaagtttgtttt |
268 |
Q |
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| T |
6317883 |
acaccaaaaccagaatttagcttcactcattaatcaactcagttcttcatgatatcaaattggaagtttcctcgaagaattatttattaaagtttgtttt |
6317784 |
T |
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| Q |
269 |
ttaggagatgttttcataagttctccta |
296 |
Q |
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| T |
6317783 |
ttaggagatgttttcataagttctccta |
6317756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 6299993 - 6299943
Alignment:
| Q |
164 |
acaacaacaccaaaaccagatttagcttcactcattaatcaactcagttct |
214 |
Q |
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||||||||||||||||||||||||||||| || || |||||||||||||| |
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| T |
6299993 |
acaacaacaccaaaaccagatttagcttctcttgttgatcaactcagttct |
6299943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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