View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0943_high_1 (Length: 924)
Name: NF0943_high_1
Description: NF0943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0943_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 1e-68; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 687 - 838
Target Start/End: Original strand, 35456561 - 35456717
Alignment:
| Q |
687 |
taagaacaaacatttattttgt-----gtgaaaaagagaagcgtgattggagaatgaagaagagtgaaagcgaagcagcagagtatttcagtaaggattt |
781 |
Q |
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| T |
35456561 |
taagaacaaacatttatttagtttagtgtgaaaaagagaagcgtgattggagaatgaagaagagtgaaagcgaagcagcagagtatttcagtaaggattt |
35456660 |
T |
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| Q |
782 |
cgaatgggaagaacttagatcagaggttgaatcaaacccttctcttcgccaccactt |
838 |
Q |
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| T |
35456661 |
cgaatgggaagaacttagatcagaggttgaatcaaacccttctcttcgccaccactt |
35456717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 480 - 542
Target Start/End: Original strand, 35456319 - 35456381
Alignment:
| Q |
480 |
caaactcaaatttgaatgaagatgttcaacctaataatatcgatattgttaattgaattgaac |
542 |
Q |
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| T |
35456319 |
caaacttaaatctgaatgaagatgttcaacctaataatattgatattgtcaattgaattgaac |
35456381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 495 - 540
Target Start/End: Complemental strand, 29716016 - 29715971
Alignment:
| Q |
495 |
atgaagatgttcaacctaataatatcgatattgttaattgaattga |
540 |
Q |
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| T |
29716016 |
atgaagatattcaatctaataatattgatattgtcaattgaattga |
29715971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 498 - 535
Target Start/End: Complemental strand, 34316420 - 34316383
Alignment:
| Q |
498 |
aagatgttcaacctaataatatcgatattgttaattga |
535 |
Q |
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| T |
34316420 |
aagatgttcaacttagtaatatcgatattgttaattga |
34316383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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