View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0943_high_11 (Length: 428)

Name: NF0943_high_11
Description: NF0943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0943_high_11
NF0943_high_11
[»] chr1 (1 HSPs)
chr1 (30-428)||(35695437-35695844)


Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 30 - 428
Target Start/End: Complemental strand, 35695844 - 35695437
Alignment:
Q  30 ctcagccggtcgatcaagagttgtaactacctagcaggaaatccagtttagtaggaaacatgtgtaggggaaaactaacattgaaacataaatgttaagt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35695844 ctcagccggtcgatcaagagttgtaactacctagcaggaaatccagtttagtaggaaacatgtgtaggggaaaactaacattgaaacataaatgttaagt 35695745  T
Q  130 cgacgcaaaaatcgacatagacatcttacaaaaatacatttctttttgtatttttcaagttgcaatataagtgtaacattgacggcaccttagttaaata 229  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35695744 cgacgcaaaaatcgacatagacatcttacaaaaagacatttctttttgtatttttcaagttgcaatataagtgtaacattgacggcaccttagttaaata 35695645  T
Q  230 agaaaaatacaaaaagaaattggtgttaattagaatgctaacacaaaggtgttcaattttcacagtttgacgtatt-------actcacaaatctgttac 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       |||||||||||||||||    
T  35695644 agaaaaatacaaaaagaaattggtgttaattagaatgctaacacaaaggtgttcaattttcacactttgacgtattactactaactcacaaatctgttac 35695545  T
Q  323 taattcattcggttagataggattaggaaggaaaaagcaaaccaaaacccaactccccatagctaccacaaaaattccaaattaaagta--acaccaaac 420  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  35695544 taattcattcggttagataggattaggaacgaaaaagcaaaccaaaacccaactccccatagctaccacaaaaattccaaattaaagtaacacaccaaac 35695445  T
Q  421 aactcaac 428  Q
    ||||||||    
T  35695444 aactcaac 35695437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University