View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0943_high_14 (Length: 369)
Name: NF0943_high_14
Description: NF0943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0943_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 50 - 342
Target Start/End: Complemental strand, 8646997 - 8646722
Alignment:
| Q |
50 |
attatagactagtaatcaacattttaaatataaattttacaatctagttaatcactttttgaatagatacaaacctattgtggattggagctatcataat |
149 |
Q |
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| T |
8646997 |
attatagactagtaatcaacattttaaatataaattttacaatctagttaatcactttttgaatagatacaaacctattgtggattggagctatcataat |
8646898 |
T |
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| Q |
150 |
aaacctttgattaacaaaactcattctcatctcatttgtccttctattgaatttgaataaacacatgactcataacatttttcgactcataacattgaat |
249 |
Q |
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| T |
8646897 |
aaacctttgattaacaaaactcattctcatctcatttgtccttctattgaatttgaataaacacatgactcataa-----------------cattgaat |
8646815 |
T |
|
| Q |
250 |
aggtacattctatttttgaaccgtttttcttatactttccctcacgtctcacttattacccaagaaaatcatgcctatcacaggttctgctcg |
342 |
Q |
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| T |
8646814 |
agatacattctatttttgaaccgtttttctcatactttccctcacgtctcacttattacccaagaaaatcatgcctatcacatgttttgctcg |
8646722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 126 - 342
Target Start/End: Original strand, 8611729 - 8611928
Alignment:
| Q |
126 |
attgtggattggagctatcataataaacctttgattaacaaaactcattctcatctcatttgtccttctattgaatttgaataaacacatgactcataac |
225 |
Q |
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| T |
8611729 |
attgtggattggagctatcatagtaaacctttgattagcaaaactcattctcatctcatttgtccttctattgaatttgaataaacacatga-------- |
8611820 |
T |
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| Q |
226 |
atttttcgactcataacattgaataggtacattctatttttgaaccgtttttcttatactttccctcacgtctcacttattacccaagaaaatcatgcct |
325 |
Q |
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| T |
8611821 |
---------ctcataacattgaatagttacattctatttttgaaccgtttttctcatactttccctcacgtctcacttattacccaagaaaatcatgcct |
8611911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 128 - 331
Target Start/End: Original strand, 8556933 - 8557132
Alignment:
| Q |
128 |
tgtggattggagctatcataataaacctttgattaacaaaactcattctcatctcatttgtccttctattgaatttgaataaacacatgactcataacat |
227 |
Q |
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| T |
8556933 |
tgtggattggagctatcacaataaatctttgattagcaaaactcattctcatctcatttatccttcttttgaatttgaataggcacatgactcatgaca- |
8557031 |
T |
|
| Q |
228 |
ttttcgactcataacattgaataggtacattctatttttgaaccgtttttcttatactttccctcacgtctcacttattacccaagaaaatcatgcctat |
327 |
Q |
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| T |
8557032 |
--ttggaggcttgtttgtgagta-ttgcattctatttttgaaccgtttttctcatacttccccttacgtctcatttctcacccaagaaaataatgcctat |
8557128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 128 - 228
Target Start/End: Complemental strand, 8555789 - 8555689
Alignment:
| Q |
128 |
tgtggattggagctatcataataaacctttgattaacaaaactcattctcatctcatttgtccttctattgaatttgaataaacacatgactcataacat |
227 |
Q |
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| T |
8555789 |
tgtggattggagctatcacaataaccctttgattagcaaaactcattctcatctcatttgtccttcatttgaatttgaataggcacatgactcatgacat |
8555690 |
T |
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| Q |
228 |
t |
228 |
Q |
| |
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| |
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| T |
8555689 |
t |
8555689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 254 - 342
Target Start/End: Complemental strand, 8594584 - 8594496
Alignment:
| Q |
254 |
acattctatttttgaaccgtttttcttatactttccctcacgtctcacttattacccaagaaaatcatgcctatcacaggttctgctcg |
342 |
Q |
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| T |
8594584 |
acattctatttttgaaccgtttttctcatactttcccttacgtctcatttctcacccaagaaaatcatgcctatcacatgttttgctcg |
8594496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 256 - 331
Target Start/End: Complemental strand, 8567187 - 8567113
Alignment:
| Q |
256 |
attctatttttgaaccgtttttcttatactttccctcacgtctcacttattacccaagaaaatcatgcctatcaca |
331 |
Q |
| |
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| T |
8567187 |
attctatttttgaaccgtttttcttatactttccctcac-actcatatattaccaaagaaaatcatgcctatcaca |
8567113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 8567318 - 8567241
Alignment:
| Q |
126 |
attgtggattggagctatcataataaacctttgattaacaaaactcattctcatctcatttgtccttctattgaattt |
203 |
Q |
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| T |
8567318 |
attgtggactgaagctatcacaataaccctttgattaggaaaactcattctcatctcatttgtccttctttttaattt |
8567241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 331
Target Start/End: Complemental strand, 8555668 - 8555600
Alignment:
| Q |
263 |
ttttgaaccgtttttcttatactttccctcacgtctcacttattacccaagaaaatcatgcctatcaca |
331 |
Q |
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| T |
8555668 |
ttttgaaccgtttttctcatacttccccttacgtctcatttctcacccaagaatatcatgcctatcaca |
8555600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 8588989 - 8588926
Alignment:
| Q |
153 |
cctttgattaacaaaactcattctcatctcatttgtccttctattgaatttgaataaacacatg |
216 |
Q |
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| T |
8588989 |
ccttttattaccaaaactcatcctcatctcatatgttcttcttttgaatttgaattagcacatg |
8588926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 11831211 - 11831281
Alignment:
| Q |
51 |
ttatagactagtaatcaacattttaaatataaattttacaatctag-ttaatcactttttgaatagataca |
120 |
Q |
| |
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|||| ||||||||||| ||||||||| |||| ||| ||||||||| |||||||| |||||| |||||||| |
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| T |
11831211 |
ttatcgactagtaatcgacattttaagtatatttttcacaatctagcttaatcacgttttgattagataca |
11831281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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