View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0943_high_15 (Length: 359)
Name: NF0943_high_15
Description: NF0943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0943_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 67 - 350
Target Start/End: Complemental strand, 42209597 - 42209315
Alignment:
| Q |
67 |
ccatgaacaaactaaatggattgatatatgtgatacgaaagacatggataacaattctcatcctattatatcaatggaagataaggaagcagtggtgttc |
166 |
Q |
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| T |
42209597 |
ccatgaacaaac-aaatggattgatatatgtgatacgaaagacatggataacaattctcatcctattatatcaatggaagataaggaagcagtgatgttc |
42209499 |
T |
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| Q |
167 |
gaagaggaatacggggagtggtgcgctggtggtcatggccctaagtgcgacgatcaatttcaagatgcttgagtcaagactatatagtctttggatccat |
266 |
Q |
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| T |
42209498 |
gaagaggaatacggggagtggtgcgctggtggtcatggccctaagtgcgacgatcaatttcaagatgcttgagtcaagactatatagtctttggatccat |
42209399 |
T |
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| Q |
267 |
aatggatcaatcaaaattacaaatttgtcgcgtaactatttttatggtannnnnnncctaagaggattacaaacatatattctt |
350 |
Q |
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| T |
42209398 |
aatggatcaatcaaaattacaaatttgtcgcgtaactatttttatggtatttttttcctaagaggattacaaacatattttctt |
42209315 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 19072774 - 19072732
Alignment:
| Q |
218 |
gatcaatttcaagatgcttgagtcaagactatatagtctttgg |
260 |
Q |
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| T |
19072774 |
gatcaatttcaagatgctttagtcaagactatatggtctttgg |
19072732 |
T |
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