View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0943_high_19 (Length: 323)
Name: NF0943_high_19
Description: NF0943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0943_high_19 |
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| [»] scaffold0164 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 30 - 278
Target Start/End: Complemental strand, 26543489 - 26543236
Alignment:
| Q |
30 |
ggttgcactttgattatcacagtaaagcaccggaggtttgatgcaatcaactcttaactctcaaaccattgtcattcagaaggtttaagttgtatttcat |
129 |
Q |
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| T |
26543489 |
ggttgcactttgattatcacagtaaagcacaggaggtttgatgcaatcaactcttaactctcaaaccagtgtcattcagtaggtctaagttgtatttcat |
26543390 |
T |
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| Q |
130 |
gtgacaaatggtgatgtcagatgtggagtgaccaacttctatgcctaaagagtacttaagcttgccaagatccataattttgaattcaacatcaagtgta |
229 |
Q |
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| T |
26543389 |
gtaacaaatggtgatgtcagatgtggagtgaccaacttctatgcctaaaaagtacttaagcttgccaagatccataattttgaattcaacatcaaatgta |
26543290 |
T |
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| Q |
230 |
attttgatcc-----tttcaatctcatccatagagtttcctgctaagcttgcat |
278 |
Q |
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| T |
26543289 |
attttgatcctttaatttcaatctcatccatagagtttcctgctaagcttgcat |
26543236 |
T |
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Target: scaffold0164 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 25701 - 25773
Alignment:
| Q |
153 |
tggagtgaccaacttctatgcctaaagagtacttaagcttgccaagatccataattttgaattcaacatcaag |
225 |
Q |
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| T |
25701 |
tggagtgagcaacctcaatgcctaagaagtattttagttttccaagatccttaattttgaactcaacatcaag |
25773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 53979671 - 53979599
Alignment:
| Q |
153 |
tggagtgaccaacttctatgcctaaagagtacttaagcttgccaagatccataattttgaattcaacatcaag |
225 |
Q |
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| T |
53979671 |
tggagtgagcaacctcaatgcctaagaagtattttagttttccaagatccttaattttgaactcaacatcaag |
53979599 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 49639628 - 49639700
Alignment:
| Q |
153 |
tggagtgaccaacttctatgcctaaagagtacttaagcttgccaagatccataattttgaattcaacatcaag |
225 |
Q |
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| T |
49639628 |
tggagtgagcaacctcaatgcctaagaagtattttagttttccaagatccttaattttgaactcaacatcaag |
49639700 |
T |
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