View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0943_high_33 (Length: 265)

Name: NF0943_high_33
Description: NF0943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0943_high_33
NF0943_high_33
[»] chr2 (1 HSPs)
chr2 (30-231)||(17577551-17577749)


Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 30 - 231
Target Start/End: Original strand, 17577551 - 17577749
Alignment:
30 acgaacaaatagagaagctacaaataacagacaaaaataaaatccaagtggaaacaccttctgaaacaccttattgacgacaaggctccacggcgccaac 129  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||| |||    
17577551 acgaacaaatagaaaagctacaaataacaaacaaaaataaaatccaagcggaaacaccctctgaaacaccttattgccgacaaggctccacggcgcaaac 17577650  T
130 aaactccaactccaacctgagaaagaggaaaggaaacaacaacacctacaagaacgaccaagagtggatcaccagccacccaaagtcagagtgatcgaag 229  Q
    ||||| ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
17577651 aaactacaactccaacctgagaaagaggaaagga---aacaacacctacaagaacgaccaagagtggatcaccagccacccaaagtcagagtgatcgaag 17577747  T

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