View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0943_high_49 (Length: 226)
Name: NF0943_high_49
Description: NF0943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0943_high_49 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 15130586 - 15130807
Alignment:
| Q |
1 |
cctctattggagactcaataaataatatcttatgcgtaatcgcacattccatagacacaatactgaccagtttcacaacgaacattgcaccctccacaat |
100 |
Q |
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| T |
15130586 |
cctctattggagactcaataaataatatcttatgcgtaatcgcacattccatagacacaatactgaccaatttcacaacgaacattgcaccctccacaat |
15130685 |
T |
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| Q |
101 |
gcctcttatcatagtttgtatcaacacatgctcctctacaacatgtttgagtgtacttgcaacgcttcttgcatgcaccacaattatgcttatcatatcc |
200 |
Q |
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| T |
15130686 |
gcctcttatcatagtttgtatcaacacatgctcctctacaacatgtttgagtgtacttgcaatgcttcttgcatgcaccacaattatgcttatcatatcc |
15130785 |
T |
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| Q |
201 |
cgaatcaatgcacttgttgttg |
222 |
Q |
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| T |
15130786 |
caaatcaatgcacttgttgttg |
15130807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 21153867 - 21154084
Alignment:
| Q |
5 |
tattggagactcaataaataatatcttatgcgtaatcgcacattccatagacacaatactgaccagtttcacaacgaacattgcaccctccacaatgcct |
104 |
Q |
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| T |
21153867 |
tattggagactcaataaataatatcttatgcataatcgcacattccatagacacaatactgaccaatttcacaccgattattgcactctccacaatgcct |
21153966 |
T |
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| Q |
105 |
cttatcatagtttgtatcaacacatgctcctctacaacatgtttgagtgtacttgcaacgcttcttgcatgcaccacaattatgcttatcatatcccgaa |
204 |
Q |
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| T |
21153967 |
cttatcatagtttgtatcaacacattgtcctctacaacatgtttgagtgtacttgcaatgcttcttgcatgcaccacaattatgcttatcatatgccaaa |
21154066 |
T |
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| Q |
205 |
tcaatgcacttgttgttg |
222 |
Q |
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| T |
21154067 |
tcaatgcatttattgttg |
21154084 |
T |
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