View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0943_high_9 (Length: 467)
Name: NF0943_high_9
Description: NF0943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0943_high_9 |
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| [»] scaffold0101 (1 HSPs) |
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Alignment Details
Target: scaffold0101 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: scaffold0101
Description:
Target: scaffold0101; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 381
Target Start/End: Original strand, 13244 - 13627
Alignment:
| Q |
8 |
aaaagaaaggaaccaaacagaatgttattgttttttaacacacaacattgcaacaaaacatcatattt-caattttacatgtatcaaaataaatgtcaga |
106 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| |||||||| |||||| |
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| T |
13244 |
aaaagaaaggaaccaaactgaatgttattgttttttaacacacaacattgcaacaaaacaacatattttcaatttaacatgtatgaaaataaaagtcaga |
13343 |
T |
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| Q |
107 |
accaaatcaaacctcggaatcaagaagtcaggaaagaat-------------atgaatatcaaacaagagaaaattaaaacaagaaggaatcgttgttcc |
193 |
Q |
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| T |
13344 |
accaaatcaaacctcggaataaagaagtcaggaaagaatatgaatacaaaagatgaatatcaaacaagagaaaattaaaacgagaaggaatcgctgttcc |
13443 |
T |
|
| Q |
194 |
caaataaccttccctgcaacacgaggaaataaaaattcaagaaaaatacatgctttcaaaaactattaagaactattgnnnnnnnctaaaagattttaga |
293 |
Q |
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| T |
13444 |
caaataaccttccctgcaacacgaggaaataaaaattcaagaaaaatatatgctttcaaaaacta-taagaactattg---aaaactaaaagattttaga |
13539 |
T |
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| Q |
294 |
agagatcaccaaatcaaaactcaacgctccatgctatgaagaaagagcatattattctgacaaaacatgctgcagaaaacacaggttc |
381 |
Q |
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| T |
13540 |
agagatcaccaaatcaaaactcaacgctccatgctatgaagaaagagcatattattctgacaaaacatgctgcagaaaacacaggttc |
13627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 17322498 - 17322606
Alignment:
| Q |
8 |
aaaagaaaggaaccaaacagaatgttattgttttttaacacacaacattgcaacaaaacatcata-tttcaattttacatgtatcaaaataaatgtcaga |
106 |
Q |
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|||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||| |||| ||||||||| |||||||| |||||||| |||||| |
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| T |
17322498 |
aaaagaaaggaaccaaactgaatgttactgttttttaacacacaacattgcatcaaaacaacatattttcaatttaacatgtatgaaaataaaagtcaga |
17322597 |
T |
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| Q |
107 |
accaaatca |
115 |
Q |
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| T |
17322598 |
accaaatca |
17322606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 17328276 - 17328384
Alignment:
| Q |
8 |
aaaagaaaggaaccaaacagaatgttattgttttttaacacacaacattgcaacaaaacatcata-tttcaattttacatgtatcaaaataaatgtcaga |
106 |
Q |
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|||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||| |||| ||||||||| |||||||| |||||||| |||||| |
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| T |
17328276 |
aaaagaaaggaaccaaactgaatgttactgttttttaacacacaacattgcatcaaaacaacatattttcaatttaacatgtatgaaaataaaagtcaga |
17328375 |
T |
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| Q |
107 |
accaaatca |
115 |
Q |
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||||||||| |
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| T |
17328376 |
accaaatca |
17328384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 17305665 - 17305773
Alignment:
| Q |
8 |
aaaagaaaggaaccaaacagaatgttattgttttttaacacacaacattgcaacaaaacatcata-tttcaattttacatgtatcaaaataaatgtcaga |
106 |
Q |
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||||||||| ||||||| |||||||| ||| ||||||||||||||||||| ||||||| |||| ||||||||| |||||||| |||||||| |||||| |
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| T |
17305665 |
aaaagaaagcaaccaaattgaatgttactgtcatttaacacacaacattgcatcaaaacaacatattttcaatttaacatgtatgaaaataaaagtcaga |
17305764 |
T |
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| Q |
107 |
accaaatca |
115 |
Q |
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| T |
17305765 |
accaaatca |
17305773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 344
Target Start/End: Original strand, 17296494 - 17296555
Alignment:
| Q |
283 |
aagattttagaagagatcaccaaatcaaaactcaacgctccatgctatgaagaaagagcata |
344 |
Q |
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|||| |||||||||||| ||||||||||||||||| ||| ||||||||||||||||| |||| |
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| T |
17296494 |
aagaatttagaagagatgaccaaatcaaaactcaaggcttcatgctatgaagaaagaacata |
17296555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 255
Target Start/End: Original strand, 17302944 - 17303028
Alignment:
| Q |
170 |
aaaacaagaaggaatcg-ttgttcccaaataaccttccctgcaacacgaggaaataaaaattcaagaaaaatacatgctttcaaaaa |
255 |
Q |
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||||| |||||||||| |||||| |||| ||||||||||||||||| | ||||||||| ||||||||| |||||||| |||||| |
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| T |
17302944 |
aaaaccagaaggaatcacttgttcttaaattaccttccctgcaacacgggaaaataaaaaatcaagaaaa--acatgcttccaaaaa |
17303028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 17303041 - 17303073
Alignment:
| Q |
283 |
aagattttagaagagatcaccaaatcaaaactc |
315 |
Q |
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| T |
17303041 |
aagattttggaagagatcaccaaatcaaaactc |
17303073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 334
Target Start/End: Original strand, 12147740 - 12147793
Alignment:
| Q |
281 |
aaaagattttagaagagatcaccaaatcaaaactcaacgctccatgctatgaag |
334 |
Q |
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||||||||||| ||||||||| ||||||| |||| | |||||||||||||||| |
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| T |
12147740 |
aaaagattttactagagatcacgaaatcaatactcgaggctccatgctatgaag |
12147793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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