View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0943_low_14 (Length: 399)
Name: NF0943_low_14
Description: NF0943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0943_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 138 - 384
Target Start/End: Complemental strand, 43653234 - 43652988
Alignment:
| Q |
138 |
acgcagaaagtaccattcattacagaagatttggaacttgaatgtgaaggaaaggacaaatacaagtgtggttctaatgttttctggaaatggtgaaaat |
237 |
Q |
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| T |
43653234 |
acgcagaaagtaccattcattacagaagatttggaacttgaatgtgaaggaaaggacaaatacaagtgtggttctaatgttttctggaaatggtgaaaat |
43653135 |
T |
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| Q |
238 |
tgacaacattttattttcctagtgttgttctctttgaaatgtatcgaacttctccttgataatataccatatttttctgcattgttgttgttattggttt |
337 |
Q |
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| T |
43653134 |
tgacaacattttattttcctagtgttgttctctttgaaatgtatcgaacttctccttgataatataccatatttttctgcattgttgttgttattggttt |
43653035 |
T |
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| Q |
338 |
attagttgaaattgttnnnnnnntgtttaaattaggcatgcctctcc |
384 |
Q |
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| T |
43653034 |
attagttgaaattgttaaaaaaatgtttaaattaggcatgcctctcc |
43652988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 43653342 - 43653302
Alignment:
| Q |
30 |
agaaggtctgactctaaccttaaacatcttttgtttcacta |
70 |
Q |
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| T |
43653342 |
agaaggtctgactctaaccttaaacatcttttgtttcacta |
43653302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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