View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0943_low_15 (Length: 394)

Name: NF0943_low_15
Description: NF0943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0943_low_15
NF0943_low_15
[»] chr2 (12 HSPs)
chr2 (1-329)||(15493899-15494227)
chr2 (185-317)||(15655016-15655148)
chr2 (179-329)||(15625463-15625613)
chr2 (179-316)||(15645858-15645995)
chr2 (198-304)||(15534698-15534804)
chr2 (198-329)||(15517883-15518014)
chr2 (254-316)||(15605601-15605663)
chr2 (1-60)||(15534238-15534297)
chr2 (15-60)||(15601436-15601481)
chr2 (1-60)||(15517725-15517784)
chr2 (18-89)||(15654708-15654775)
chr2 (24-89)||(15625037-15625098)


Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 15493899 - 15494227
Alignment:
Q  1 agttttttgacttaatttgtgctggcaacattatcttctttactttctatcatacgaaaacatatatacagatgttaagtaaaatatagttaaaatagga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15493899 agttttttgacttaatttgtgctggcaacattatcttctttactttctatcatacgaaaacatatatacagatgttaagtaaaatatagttaaaatagga 15493998  T
Q  101 tcaggcgcgtaggccagcctcgtctaaattgagggtccatccagaggagccaaaattgaaaatgcaaagccataagataaaacggttgcattacatgtac 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15493999 tcaggcacgtaggccagcctcgtctaaattgagggtccatccagaggagccaaaattgaaaatgcaaagccataagataaaacggttgcattacatgtac 15494098  T
Q  201 ctcaaaccatactaactcgacacacatttgaaaagctgctccagaaaccaattcaagttgagctcgtggtgctaattttgcagccaagtgtaatatagtg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  15494099 ctcaaaccatactaactcgacacacatttgaaaagctgctccagaaaccaattcaagttgacctcgtcgtgctaattttgcagccaagtgtaatatagtg 15494198  T
Q  301 tttctgtcttcatcatcaaatgtcactat 329  Q
    |||||||||||||| ||||||||||||||    
T  15494199 tttctgtcttcatcttcaaatgtcactat 15494227  T

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Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 185 - 317
Target Start/End: Original strand, 15655016 - 15655148
Alignment:
Q  185 gttgcattacatgtacctcaaaccatactaactcgacacacatttgaaaagctgctccagaaaccaattcaagttgagctcgtggtgctaattttgcagc 284  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||    
T  15655016 gttgcattgcatgtacctcaaaccatactaactcgacgcacatttgaaaagcagctccagaaaccaattcaagttgacttcgtggtgctaattttgcagc 15655115  T
Q  285 caagtgtaatatagtgtttctgtcttcatcatc 317  Q
    |||||| |||| |||||||||||| | ||||||    
T  15655116 caagtgcaataaagtgtttctgtcattatcatc 15655148  T

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Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 179 - 329
Target Start/End: Original strand, 15625463 - 15625613
Alignment:
Q  179 aaaacggttgcattacatgtacctcaaaccatactaactcgacacacatttgaaaagctgctccagaaaccaattcaagttgagctcgtggtgctaattt 278  Q
    |||| ||||||||| |||||||||||||||||| |||||| |  ||||||||||||||||  ||||||||||||||||||||| || |||||||||||||    
T  15625463 aaaagggttgcattgcatgtacctcaaaccataataactcaaggcacatttgaaaagctgacccagaaaccaattcaagttgaacttgtggtgctaattt 15625562  T
Q  279 tgcagccaagtgtaatatagtgtttctgtcttcatcatcaaatgtcactat 329  Q
    |||||||||||| |||| |||||||||||| ||||| ||||||||||||||    
T  15625563 tgcagccaagtgcaataaagtgtttctgtcatcatcttcaaatgtcactat 15625613  T

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Target: chr2; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 179 - 316
Target Start/End: Original strand, 15645858 - 15645995
Alignment:
Q  179 aaaacggttgcattacatgtacctcaaaccatactaactcgacacacatttgaaaagctgctccagaaaccaattcaagttgagctcgtggtgctaattt 278  Q
    |||| ||||||||| |||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||  |||||||||||||||    
T  15645858 aaaagggttgcattgcatgtacctcaaaccatagtaactcgacgcacatttgaaaagcagctccagaaaccaattcaagttgatttcgtggtgctaattt 15645957  T
Q  279 tgcagccaagtgtaatatagtgtttctgtcttcatcat 316  Q
    |||||||||||| ||||  ||||||||||| |||||||    
T  15645958 tgcagccaagtgcaatagtgtgtttctgtcatcatcat 15645995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 198 - 304
Target Start/End: Original strand, 15534698 - 15534804
Alignment:
Q  198 tacctcaaaccatactaactcgacacacatttgaaaagctgctccagaaaccaattcaagttgagctcgtggtgctaattttgcagccaagtgtaatata 297  Q
    |||||||||||||| |||||| |  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |    
T  15534698 tacctcaaaccataataactcaaggcacatttgaaaagctgctccagaaaccaattcaagttgacctcgtggtgctaattttgcagccaagtgcaataaa 15534797  T
Q  298 gtgtttc 304  Q
    |||||||    
T  15534798 gtgtttc 15534804  T

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Target: chr2; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 198 - 329
Target Start/End: Original strand, 15517883 - 15518014
Alignment:
Q  198 tacctcaaaccatactaactcgacacacatttgaaaagctgctccagaaaccaattcaagttgagctcgtggtgctaattttgcagccaagtgtaatata 297  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||| |||| ||||| |||| |    
T  15517883 tacctcaaaccataataactcgacacacatttgaaaagctgcaccagaaaccaattcaagttgaccttgtggtgctaattttccagctaagtgcaataaa 15517982  T
Q  298 gtgtttctgtcttcatcatcaaatgtcactat 329  Q
     ||||||  || || || ||||||||||||||    
T  15517983 ctgtttccttcatcgtcttcaaatgtcactat 15518014  T

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Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 254 - 316
Target Start/End: Original strand, 15605601 - 15605663
Alignment:
Q  254 caagttgagctcgtggtgctaattttgcagccaagtgtaatatagtgtttctgtcttcatcat 316  Q
    |||||||| || ||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  15605601 caagttgaacttgtggtgctaattttgcagccaagtgcaataaagtgtttctgtcttcatcat 15605663  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 15534238 - 15534297
Alignment:
Q  1 agttttttgacttaatttgtgctggcaacattatcttctttactttctatcatacgaaaa 60  Q
    |||||||  |||| ||||||||||||||||||||||||||||| |||||||||| |||||    
T  15534238 agtttttcaactttatttgtgctggcaacattatcttctttacattctatcatatgaaaa 15534297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 15601436 - 15601481
Alignment:
Q  15 atttgtgctggcaacattatcttctttactttctatcatacgaaaa 60  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||    
T  15601436 atttgtgctggcagcattatcttctttactttctatcatatgaaaa 15601481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 15517725 - 15517784
Alignment:
Q  1 agttttttgacttaatttgtgctggcaacattatcttctttactttctatcatacgaaaa 60  Q
    ||||||| |||||||| ||||| |||| ||||||||||||||| |||||||||| |||||    
T  15517725 agtttttcgacttaatctgtgcgggcagcattatcttctttacattctatcatatgaaaa 15517784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 15654708 - 15654775
Alignment:
Q  18 tgtgctggcaacattatcttctttactttctatcatacgaaaacatatatacagatgttaagtaaaatatag 89  Q
    ||||| ||||||||||||||||||||||||| ||| | |||||  |||||||    ||||||||||||||||    
T  15654708 tgtgcaggcaacattatcttctttactttctgtcacatgaaaatgtatatac----gttaagtaaaatatag 15654775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 15625037 - 15625098
Alignment:
Q  24 ggcaacattatcttctttactttctatcatacgaaaacatatatacagatgttaagtaaaatatag 89  Q
    ||||||||||||||||||||||||| ||| | |||||  |||||    ||||||||||||||||||    
T  15625037 ggcaacattatcttctttactttctgtcacatgaaaatgtatat----atgttaagtaaaatatag 15625098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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