View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0943_low_19 (Length: 358)
Name: NF0943_low_19
Description: NF0943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0943_low_19 |
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| [»] chr3 (8 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 43 - 358
Target Start/End: Complemental strand, 27105795 - 27105480
Alignment:
| Q |
43 |
acctgtgtgggaaagagagagacttattggatcaataactaaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttctg |
142 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27105795 |
acctgtgtgggaaagagagagacttattggatcaataactaaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttctg |
27105696 |
T |
|
| Q |
143 |
aatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggta |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27105695 |
aatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggta |
27105596 |
T |
|
| Q |
243 |
taaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattgt |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27105595 |
taaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattgt |
27105496 |
T |
|
| Q |
343 |
aactggtattagacgc |
358 |
Q |
| |
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| |||||||||||||| |
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| T |
27105495 |
agctggtattagacgc |
27105480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 43 - 358
Target Start/End: Complemental strand, 27098796 - 27098481
Alignment:
| Q |
43 |
acctgtgtgggaaagagagagacttattggatcaataactaaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttctg |
142 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27098796 |
acctgtgtgggaaagagagagacttattggatcaataactgaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttctg |
27098697 |
T |
|
| Q |
143 |
aatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggta |
242 |
Q |
| |
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|||||| |||||||||||||||||||| |||||||||||||| | || ||||||||| |||||| |||||||||||| |||||||||||||||||| || |
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| T |
27098696 |
aatcaacacaacactacagttatgaagcaatattgttttaatattgatggtgaaatgataacaaggcttaagttgagcttgatgaaggaaagtggaaata |
27098597 |
T |
|
| Q |
243 |
taaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattgt |
342 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
27098596 |
taaggttcacaacttttgaatcaattgcaggttatgtttggagatcaagagcaagagccttaaaacttaacagcaatggtgaaacagtactgaccattgt |
27098497 |
T |
|
| Q |
343 |
aactggtattagacgc |
358 |
Q |
| |
|
| | |||||||||||| |
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| T |
27098496 |
agcaggtattagacgc |
27098481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 42 - 320
Target Start/End: Complemental strand, 27063002 - 27062730
Alignment:
| Q |
42 |
aacctgtgtgggaaagagagagacttattggatcaataactaaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttct |
141 |
Q |
| |
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||||||||||||||||||| | | ||||| ||||||||| ||||||||||||| || |||| ||| ||| |||||||||||||||||||| ||| | |
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| T |
27063002 |
aacctgtgtgggaaagagaaaaccaagttggaacaataactacacaaccatttccacaatgccccatggacagagaatctgttgcattttcaccctttgt |
27062903 |
T |
|
| Q |
142 |
gaatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggt |
241 |
Q |
| |
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||||||| || |||| | |||| ||| ||||||||||||| || ||||| |||| | |||||| |||||||||||||||||||| |||| | |
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| T |
27062902 |
gaatcaacctaatactaaaattattaagcaatattgttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaacgaaa------at |
27062809 |
T |
|
| Q |
242 |
ataaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatg |
320 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| || ||||| |
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| T |
27062808 |
ataaggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttagcagcaatg |
27062730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 42 - 341
Target Start/End: Complemental strand, 27041653 - 27041354
Alignment:
| Q |
42 |
aacctgtgtgggaaagagagagacttattggatcaataactaaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttct |
141 |
Q |
| |
|
||||||||||||||||||| | || || |||||||| ||| | |||| |||||| || | || ||| || ||||||||| || ||||||| ||| | |
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| T |
27041653 |
aacctgtgtgggaaagagaaaaacaagttcgatcaatagctataaaaccttttccacaatgtcccatggaccgagaatctgtttcactttcaccctttgt |
27041554 |
T |
|
| Q |
142 |
gaatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggt |
241 |
Q |
| |
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|||||| | || ||||| | || || ||||||||||||| || |||||||||||| ||||| ||||| |||||||||||||| ||| || | |
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| T |
27041553 |
aaatcaaaataatactacgataattaaacaatattgttttaaagtagagggtgaaatgataacaggacttaaattgagtttgatgaataaaaatgaaaaa |
27041454 |
T |
|
| Q |
242 |
ataaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattg |
341 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
27041453 |
atgaggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttaacagcaatggtgaaacagtgttgaccattg |
27041354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 42 - 322
Target Start/End: Complemental strand, 27086131 - 27085851
Alignment:
| Q |
42 |
aacctgtgtgggaaagagagagacttattggatcaataactaaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttct |
141 |
Q |
| |
|
||||||||||||||||||| | || ||||||||||| ||| |||| | |||||| || | || ||| || ||||||||| || ||||||| ||| | |
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| T |
27086131 |
aacctgtgtgggaaagagaaaaacaagttggatcaatagctatacaaacttttccacaatgtcccatggaccgagaatctgtttcactttcaccctttgt |
27086032 |
T |
|
| Q |
142 |
gaatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggt |
241 |
Q |
| |
|
|||||| | || ||||| | || || ||||||||||||| || |||||||||||| ||| || |||||||||||||||||||| |||| || | | |
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|
| T |
27086031 |
aaatcaaaataatactacgataattaaacaatattgttttaaagtagagggtgaaatgataagaagacttaagttgagtttgatgaatgaaaatgaaaat |
27085932 |
T |
|
| Q |
242 |
ataaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggt |
322 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| | ||||||| |
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|
| T |
27085931 |
ataaggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttaaaagcaatggt |
27085851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 42 - 320
Target Start/End: Complemental strand, 27070075 - 27069797
Alignment:
| Q |
42 |
aacctgtgtgggaaagagagagacttattggatcaataactaaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttct |
141 |
Q |
| |
|
||||||||||||||||||| | || ||||||||||| ||| |||||| |||||| || | || ||| ||| ||||||||||||||||||| ||| | |
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|
| T |
27070075 |
aacctgtgtgggaaagagaaacacaagttggatcaatagctatacaaccttttccacaatgtcccatggacagaaaatctgttgcattttcaccctttgt |
27069976 |
T |
|
| Q |
142 |
gaatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggt |
241 |
Q |
| |
|
||||||| || |||||| |||| ||| |||||| |||||| || ||||| |||| | |||||| |||||||||||||||||||| |||||| | |
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| T |
27069975 |
gaatcaaactaatactacaattattaagcaatattcttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaataaaagtgaaaaa |
27069876 |
T |
|
| Q |
242 |
ataaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatg |
320 |
Q |
| |
|
||| |||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||| || ||||| |
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|
| T |
27069875 |
atagggtttacaacttttgaagttcttgcaggttatgtgtggaggtcaagagcaagagccttaaagcttagcagcaatg |
27069797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 242 - 358
Target Start/End: Complemental strand, 27056765 - 27056650
Alignment:
| Q |
242 |
ataaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattg |
341 |
Q |
| |
|
|||||||||||||||||||| | | ||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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|
| T |
27056765 |
ataaggttcacaacttttgagt-acttgcaggttatgtgtagaggtcaagagcaagagccttaaaacttaacagcaatggtgaaacagtgctgaccattg |
27056667 |
T |
|
| Q |
342 |
taactggtattagacgc |
358 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
27056666 |
cagttggtattagacgc |
27056650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 335
Target Start/End: Complemental strand, 27045834 - 27045773
Alignment:
| Q |
274 |
ttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttga |
335 |
Q |
| |
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|||||||||||| |||||||||||||||||| |||||| ||||||||| ||||| |||||| |
|
|
| T |
27045834 |
ttatgtgtggaggtcaagagcaagagccttacaacttagcaacaatggaaaaacaatgttga |
27045773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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