View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0943_low_20 (Length: 349)
Name: NF0943_low_20
Description: NF0943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0943_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 23 - 264
Target Start/End: Complemental strand, 31727458 - 31727217
Alignment:
| Q |
23 |
catcatcatctggagttagaaatctattgccttgactaaaaatagttggggacgaacttccactgattgcatattgtcgccaatgtgtgtaatcattgtt |
122 |
Q |
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| T |
31727458 |
catcatcatctggagctagaaatctattgccttgactaaaaatagttcgggacgaacttccaccgattgcatattgttgccaatgtgtgtaatcattgtt |
31727359 |
T |
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| Q |
123 |
caccacatgaaagtatccgaacctgcatcagcaacatttgtgtagaaaaaatttcaaactgttaggaataagagtaaaaatatataacaaatggcaagta |
222 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31727358 |
caccacatgaaagtatccgaacctgcatctgcaacattcgtgtagaaaaaatttcaaactgttaggaataagagtaaaaatatataacaaatggcaagta |
31727259 |
T |
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| Q |
223 |
gggcttaattattgtggcagagaaaaattaactaataaacct |
264 |
Q |
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| T |
31727258 |
gggcttaattactgtggcagagaaaaattaactaataaacct |
31727217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 23 - 258
Target Start/End: Complemental strand, 39082835 - 39082586
Alignment:
| Q |
23 |
catcatcatctggagttagaaatctattgccttgactaaaaatagttggggacgaacttccactgattgcatattgtcgccaatgtgtgtaatcattgtt |
122 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||| |
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| T |
39082835 |
catcatcatctggagctagaaatctattgccttgactaaaaatagttggggacgaacttccaccaattgcatattgttgccaatgtgtataatcattgtt |
39082736 |
T |
|
| Q |
123 |
caccacatgaaagtatccgaacctgcatcagcaacatttgtgtagaaaaaatttcaaactgttaggaat--------------aagagtaaaaatatata |
208 |
Q |
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| T |
39082735 |
gaccacatgaaagtatccgaacctgcacctgcaacatttgtgtagaaaaatattcaaactgttaggactaatctctcaaaataaagagtaaaaatatata |
39082636 |
T |
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| Q |
209 |
acaaatggcaagtagggcttaattattgtggcagagaaaaattaactaat |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39082635 |
acaaatggcaagtagggcttaattattgtggcagagaaaaattaactaat |
39082586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 39076255 - 39076217
Alignment:
| Q |
102 |
ccaatgtgtgtaatcattgttcaccacatgaaagtatcc |
140 |
Q |
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| T |
39076255 |
ccaatgtgtgtagtcattgttcaccacatgaaaatatcc |
39076217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 255 - 333
Target Start/End: Complemental strand, 8646901 - 8646823
Alignment:
| Q |
255 |
taataaacctttgattaacaaaactcattctcatctcatttgtccttctattgaatttgaataaacacatgactcataa |
333 |
Q |
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| T |
8646901 |
taataaacctttgattaacaaaactcattctcatctcatttgtccttctattgaatttgaataaacacatgactcataa |
8646823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 258 - 333
Target Start/End: Original strand, 8611752 - 8611827
Alignment:
| Q |
258 |
taaacctttgattaacaaaactcattctcatctcatttgtccttctattgaatttgaataaacacatgactcataa |
333 |
Q |
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| T |
8611752 |
taaacctttgattagcaaaactcattctcatctcatttgtccttctattgaatttgaataaacacatgactcataa |
8611827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 256 - 331
Target Start/End: Complemental strand, 8555770 - 8555695
Alignment:
| Q |
256 |
aataaacctttgattaacaaaactcattctcatctcatttgtccttctattgaatttgaataaacacatgactcat |
331 |
Q |
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| T |
8555770 |
aataaccctttgattagcaaaactcattctcatctcatttgtccttcatttgaatttgaataggcacatgactcat |
8555695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 256 - 331
Target Start/End: Original strand, 8556952 - 8557027
Alignment:
| Q |
256 |
aataaacctttgattaacaaaactcattctcatctcatttgtccttctattgaatttgaataaacacatgactcat |
331 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||| |
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| T |
8556952 |
aataaatctttgattagcaaaactcattctcatctcatttatccttcttttgaatttgaataggcacatgactcat |
8557027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 8567297 - 8567241
Alignment:
| Q |
256 |
aataaacctttgattaacaaaactcattctcatctcatttgtccttctattgaattt |
312 |
Q |
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||||| |||||||||| |||||||||||||||||||||||||||||| || ||||| |
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| T |
8567297 |
aataaccctttgattaggaaaactcattctcatctcatttgtccttctttttaattt |
8567241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 325
Target Start/End: Complemental strand, 8588989 - 8588926
Alignment:
| Q |
262 |
cctttgattaacaaaactcattctcatctcatttgtccttctattgaatttgaataaacacatg |
325 |
Q |
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||||| |||| |||||||||| |||||||||| ||| ||||| |||||||||||| | |||||| |
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| T |
8588989 |
ccttttattaccaaaactcatcctcatctcatatgttcttcttttgaatttgaattagcacatg |
8588926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 7592262 - 7592294
Alignment:
| Q |
102 |
ccaatgtgtgtaatcattgttcaccacatgaaa |
134 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
7592262 |
ccaatgtgtgtaatcattgttcaccacatgaaa |
7592294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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