View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0943_low_26 (Length: 322)

Name: NF0943_low_26

Description: NF0943

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF0943_low_26

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 173; Significance: 5e-93; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 173; E-Value: 5e-93

Query Start/End: Original strand, 138 - 310

Target Start/End: Complemental strand, 43653234 - 43653062

Alignment:

Q	138	acgcagaaagtaccattcattacagaagatttggaacttgaatgtgaaggaaaggacaaatacaagtgtggttctaatgttttctggaaatggtgaaaat	237	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43653234	acgcagaaagtaccattcattacagaagatttggaacttgaatgtgaaggaaaggacaaatacaagtgtggttctaatgttttctggaaatggtgaaaat	43653135	T

Q	238	tgacaacattttattttcctagtgttgttctctttgaaatgtatcgaacttctccttgataatataccatatt	310	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43653134	tgacaacattttattttcctagtgttgttctctttgaaatgtatcgaacttctccttgataatataccatatt	43653062	T

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Target: chr3; HSP #2

Raw Score: 41; E-Value: 0.00000000000003

Query Start/End: Original strand, 30 - 70

Target Start/End: Complemental strand, 43653342 - 43653302

Alignment:

Q	30	agaaggtctgactctaaccttaaacatcttttgtttcacta	70	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43653342	agaaggtctgactctaaccttaaacatcttttgtttcacta	43653302	T

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