View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0943_low_33 (Length: 284)

Name: NF0943_low_33
Description: NF0943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0943_low_33
NF0943_low_33
[»] chr8 (1 HSPs)
chr8 (71-150)||(29022637-29022716)
[»] chr1 (2 HSPs)
chr1 (71-150)||(292351-292430)
chr1 (232-284)||(35817209-35817261)
[»] chr2 (1 HSPs)
chr2 (77-150)||(23357658-23357731)
[»] chr5 (1 HSPs)
chr5 (71-150)||(41741224-41741303)
[»] chr4 (2 HSPs)
chr4 (71-142)||(28987912-28987983)
chr4 (83-125)||(16561504-16561546)
[»] chr3 (2 HSPs)
chr3 (71-150)||(16250867-16250946)
chr3 (86-124)||(23493480-23493518)
[»] scaffold0961 (1 HSPs)
scaffold0961 (86-150)||(752-816)
[»] chr6 (1 HSPs)
chr6 (86-125)||(17834509-17834548)
[»] chr7 (1 HSPs)
chr7 (76-150)||(3750149-3750223)


Alignment Details
Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 71 - 150
Target Start/End: Original strand, 29022637 - 29022716
Alignment:
Q  71 gcagttacttttccaaattacccataaattcaagtcttcaatttctctttctcacgacctttcttcctttcattacttca 150  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29022637 gcaggtacttttccaaattacccataaattcaagtcttcaatttctctttctcacaacctttcttcctttcattacttca 29022716  T

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Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 71 - 150
Target Start/End: Complemental strand, 292430 - 292351
Alignment:
Q  71 gcagttacttttccaaattacccataaattcaagtcttcaatttctctttctcacgacctttcttcctttcattacttca 150  Q
    |||| |||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  292430 gcaggtactttaccaaattacccataaattcaagccttcaatttctctttctcacaacctttcttcctttcattacttca 292351  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 35817209 - 35817261
Alignment:
Q  232 tgtgtaatatcttaaacaaattcatcagatatatttgataaaaacaccactaa 284  Q
    ||||| |||||||||||||||| || ||| ||||||| ||||| |||||||||    
T  35817209 tgtgtcatatcttaaacaaattaataagaaatatttggtaaaagcaccactaa 35817261  T

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Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 23357658 - 23357731
Alignment:
Q  77 acttttccaaattacccataaattcaagtcttcaatttctctttctcacgacctttcttcctttcattacttca 150  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  23357658 actttaccaaattacccataaattcaagccttcaatttctctttctcacaacctttcttcctttcattacttca 23357731  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 71 - 150
Target Start/End: Complemental strand, 41741303 - 41741224
Alignment:
Q  71 gcagttacttttccaaattacccataaattcaagtcttcaatttctctttctcacgacctttcttcctttcattacttca 150  Q
    |||| |||||| |||||||||||||||||||||| ||||||||||||||||| || | ||||||||||||||||||||||    
T  41741303 gcaggtactttaccaaattacccataaattcaagccttcaatttctctttcttacaaactttcttcctttcattacttca 41741224  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 28987983 - 28987912
Alignment:
Q  71 gcagttacttttccaaattacccataaattcaagtcttcaatttctctttctcacgacctttcttcctttca 142  Q
    |||| |||||| || |||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||    
T  28987983 gcaggtactttacctaattacccataaattcaagtctccaatttctctttctcacaagctttcttcctttca 28987912  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 16561504 - 16561546
Alignment:
Q  83 ccaaattacccataaattcaagtcttcaatttctctttctcac 125  Q
    |||||||||||||||||||||| ||||||| ||||||||||||    
T  16561504 ccaaattacccataaattcaagccttcaatctctctttctcac 16561546  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 150
Target Start/End: Complemental strand, 16250946 - 16250867
Alignment:
Q  71 gcagttacttttccaaattacccataaattcaagtcttcaatttctctttctcacgacctttcttcctttcattacttca 150  Q
    |||| |||||| || ||||||| ||||||||||| |||||||||||||||||||| || ||| ||||||| |||||||||    
T  16250946 gcaggtactttacctaattacctataaattcaagccttcaatttctctttctcacaactttttttcctttaattacttca 16250867  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 124
Target Start/End: Original strand, 23493480 - 23493518
Alignment:
Q  86 aattacccataaattcaagtcttcaatttctctttctca 124  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  23493480 aattacccctaaattcaagccttcaatttctctttctca 23493518  T

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Target: scaffold0961 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0961
Description:

Target: scaffold0961; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 816 - 752
Alignment:
Q  86 aattacccataaattcaagtcttcaatttctctttctcacgacctttcttcc-tttcattacttca 150  Q
    |||||||| |||||||||| |||||||||||||||||||| |  |||||||| |||||||||||||    
T  816 aattacccctaaattcaagccttcaatttctctttctcac-aattttcttccttttcattacttca 752  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 17834548 - 17834509
Alignment:
Q  86 aattacccataaattcaagtcttcaatttctctttctcac 125  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  17834548 aattacccctaaattcaagccttcaatttctctttctcac 17834509  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 3750149 - 3750223
Alignment:
Q  76 tacttttccaaattacccataaattcaagtcttcaatttctctttctcacgacctttcttcctttcattacttca 150  Q
    |||||| || ||||||| ||||||| ||| |||||||||||||||||||| |  ||||||  |||| ||||||||    
T  3750149 tactttacctaattacctataaatttaagccttcaatttctctttctcacaatttttctttgtttcgttacttca 3750223  T

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