View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0943_low_35 (Length: 280)

Name: NF0943_low_35
Description: NF0943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0943_low_35
NF0943_low_35
[»] chr6 (8 HSPs)
chr6 (29-275)||(34383283-34383529)
chr6 (109-184)||(13627641-13627716)
chr6 (168-204)||(34103681-34103717)
chr6 (109-184)||(9231806-9231881)
chr6 (109-184)||(24694603-24694678)
chr6 (110-184)||(14309752-14309825)
chr6 (168-205)||(27863694-27863731)
chr6 (168-204)||(11279536-11279572)
[»] chr5 (11 HSPs)
chr5 (107-184)||(8456913-8456990)
chr5 (109-184)||(6257362-6257437)
chr5 (109-184)||(23218586-23218661)
chr5 (107-184)||(10081246-10081325)
chr5 (168-204)||(22903252-22903288)
chr5 (109-184)||(16618522-16618597)
chr5 (109-184)||(37168985-37169060)
chr5 (109-184)||(39862439-39862514)
chr5 (136-204)||(2676500-2676568)
chr5 (109-177)||(15631722-15631790)
chr5 (168-204)||(25560424-25560460)
[»] chr4 (12 HSPs)
chr4 (107-184)||(17888500-17888577)
chr4 (107-184)||(31377491-31377567)
chr4 (168-204)||(11054448-11054484)
chr4 (109-184)||(1535872-1535947)
chr4 (109-184)||(16338165-16338240)
chr4 (109-184)||(37801216-37801291)
chr4 (107-184)||(11054557-11054633)
chr4 (151-184)||(47084113-47084146)
chr4 (168-205)||(50328790-50328827)
chr4 (168-204)||(17888647-17888683)
chr4 (108-184)||(20818668-20818744)
chr4 (168-204)||(31377385-31377421)
[»] chr1 (11 HSPs)
chr1 (107-184)||(38859952-38860029)
chr1 (109-184)||(42517246-42517321)
chr1 (109-184)||(47022803-47022878)
chr1 (109-184)||(10155968-10156043)
chr1 (109-166)||(23908394-23908451)
chr1 (109-166)||(29149510-29149567)
chr1 (107-184)||(37189741-37189815)
chr1 (138-186)||(26511615-26511663)
chr1 (109-184)||(7742731-7742806)
chr1 (168-205)||(44107485-44107522)
chr1 (144-184)||(10907635-10907675)
[»] chr3 (8 HSPs)
chr3 (109-184)||(36539733-36539808)
chr3 (109-184)||(8950456-8950531)
chr3 (109-184)||(21853298-21853373)
chr3 (109-184)||(40845869-40845944)
chr3 (107-184)||(20382620-20382695)
chr3 (109-184)||(44994920-44994995)
chr3 (171-205)||(6280458-6280492)
chr3 (168-205)||(48206848-48206885)
[»] chr2 (10 HSPs)
chr2 (109-184)||(3597842-3597917)
chr2 (168-243)||(1387384-1387459)
chr2 (109-184)||(42769710-42769785)
chr2 (109-184)||(14186390-14186465)
chr2 (109-184)||(29846543-29846618)
chr2 (107-184)||(1386112-1386189)
chr2 (109-184)||(14941996-14942071)
chr2 (109-184)||(40277240-40277315)
chr2 (107-157)||(3956700-3956750)
chr2 (168-204)||(23685467-23685503)
[»] chr8 (6 HSPs)
chr8 (109-184)||(42072529-42072604)
chr8 (143-184)||(16591361-16591402)
chr8 (109-184)||(35806895-35806970)
chr8 (168-204)||(16591440-16591476)
chr8 (109-184)||(22324697-22324772)
chr8 (109-184)||(42013973-42014048)
[»] chr7 (9 HSPs)
chr7 (109-184)||(44164695-44164770)
chr7 (107-184)||(19334510-19334587)
chr7 (109-184)||(34707217-34707292)
chr7 (109-184)||(10576774-10576849)
chr7 (109-184)||(29238095-29238170)
chr7 (109-184)||(34259619-34259694)
chr7 (134-184)||(41853212-41853262)
chr7 (168-204)||(10334173-10334209)
chr7 (168-204)||(17303212-17303248)
[»] scaffold0079 (1 HSPs)
scaffold0079 (109-184)||(54620-54695)
[»] scaffold0016 (1 HSPs)
scaffold0016 (168-205)||(85505-85542)


Alignment Details
Target: chr6 (Bit Score: 183; Significance: 5e-99; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 29 - 275
Target Start/End: Original strand, 34383283 - 34383529
Alignment:
Q  29 aactttggtctctgtttgatcttctcttcgcataggtgctcaatttctcgaacctctttactcaatttggctaagccgatgggcggttctatggcctggc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34383283 aactttggtctctgtttgatcttctcttcgcataggtgctcaatttctcgaacctctttactcaatttggctaagccgatgggcggttctatggcctggc 34383382  T
Q  129 gaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaacctttataaatgtgttgcaaannnnnnnnacccgaactttacaa 228  Q
    |||||| || ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||        |  ||||||||||||    
T  34383383 gaccccgggtattcgcccgggctccggcctaaatttttcgcaatttcttatgcaaacctttataaatgtgttgcaaaatttttttaatcgaactttacaa 34383482  T
Q  229 taatcctagctccgccaatacaaccaatagccattttctctgctcct 275  Q
    ||||||||||||||||| | |||||||||||||||||| || |||||    
T  34383483 taatcctagctccgccactgcaaccaatagccattttcactactcct 34383529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 13627716 - 13627641
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||| |||||||||| ||| ||| ||||| ||||| | |||||||| |||||||||| ||||||    
T  13627716 gggcggttctaaggcccggcgaccccaagcactcgtccgggctccgggccaaattttttgcaatttcttgtgtaaa 13627641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 34103717 - 34103681
Alignment:
Q  168 gcaatttcttatgtaaacctttataaatgtgttgcaa 204  Q
    |||||||||||||||||||||| ||||||||||||||    
T  34103717 gcaatttcttatgtaaacctttgtaaatgtgttgcaa 34103681  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 9231806 - 9231881
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||  ||||||||| |||| ||||||||| ||||| | || ||||| |||||||||| ||||||    
T  9231806 gggcggttctaaggctcggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaa 9231881  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 24694603 - 24694678
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||| ||| ||||  |||| ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  24694603 gggcggttctaaggcccggcaaccctgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 24694678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 184
Target Start/End: Original strand, 14309752 - 14309825
Alignment:
Q  110 ggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||| || |||| ||||||||||| || |||||||| ||| |||| |||||||| |||||||||| ||||||    
T  14309752 ggcggttataaggcccggcgaccccagacactcgcccggtttcgggcc-aaattttttgcaatttcttgtgtaaa 14309825  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 27863731 - 27863694
Alignment:
Q  168 gcaatttcttatgtaaacctttataaatgtgttgcaaa 205  Q
    |||||||||||||||||| | |||||||||||||||||    
T  27863731 gcaatttcttatgtaaacatctataaatgtgttgcaaa 27863694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 11279572 - 11279536
Alignment:
Q  168 gcaatttcttatgtaaacctttataaatgtgttgcaa 204  Q
    ||||||||||||||||| || ||||||||||||||||    
T  11279572 gcaatttcttatgtaaatctctataaatgtgttgcaa 11279536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 8456913 - 8456990
Alignment:
Q  107 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    |||||||||||||||||| |||||||||| ||| ||||||||| ||||||| ||||||||  ||||||||||||||||    
T  8456913 atgggcggttctatggcccggcgaccccatgcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaa 8456990  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 6257362 - 6257437
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||| ||||||||| |||| ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  6257362 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 6257437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 23218661 - 23218586
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||| ||||| ||| |||| ||||||||||||||| | ||| |||| |||||||||| ||||||    
T  23218661 gggcggttctaaggcccggcgatcccgggcactcgcccgggttccgggccaaagtttttgcaatttcttgtgtaaa 23218586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 10081325 - 10081246
Alignment:
Q  107 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaa--atttttcgcaatttcttatgtaaa 184  Q
    |||||||||||||||||| ||||| |||||||| ||||||||| || |||| ||   |||||  ||||||||||||||||    
T  10081325 atgggcggttctatggcccggcgatcccaggcactcgcccgggctctggcccaattttttttttcaatttcttatgtaaa 10081246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 22903288 - 22903252
Alignment:
Q  168 gcaatttcttatgtaaacctttataaatgtgttgcaa 204  Q
    |||||||||||||||||||| ||||||||||||||||    
T  22903288 gcaatttcttatgtaaacctctataaatgtgttgcaa 22903252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 16618522 - 16618597
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||| ||||||||| |||| ||| ||||| ||||| | ||||||||  ||||||||| ||||||    
T  16618522 gggcggttctaaggcccggcgaccccgggcactcgtccgggctccgggccaaattttttacaatttcttgtgtaaa 16618597  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 37168985 - 37169060
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||| ||||||||| |||| | ||||||| ||||| | |||||||| ||||||| || ||||||    
T  37168985 gggcggttctaaggcccggcgaccccgggcacttgcccgggctccgggccaaattttttgcaattttttgtgtaaa 37169060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 39862439 - 39862514
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||| ||||||||| |||| ||||||| | ||||| | || ||||| |||||||||| ||||||    
T  39862439 gggcggttctaaggcccggcgaccccgggcactcgcccgagctccgggccaatttttttgcaatttcttgtgtaaa 39862514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 2676500 - 2676568
Alignment:
Q  136 ggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaacctttataaatgtgttgcaa 204  Q
    |||| ||||||||| || || | || |||||  ||||||||||||||||||  ||||||||||||||||    
T  2676500 ggcactcgcccgggctctggtccaattttttttcaatttcttatgtaaacccctataaatgtgttgcaa 2676568  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 15631790 - 15631722
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttctt 177  Q
    ||||||||||| |||| ||||||||| |||| ||||||||| ||| | | ||||||||  |||||||||    
T  15631790 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccaggccaaattttttacaatttctt 15631722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 25560424 - 25560460
Alignment:
Q  168 gcaatttcttatgtaaacctttataaatgtgttgcaa 204  Q
    |||||||||||||||||||  ||||||||||||||||    
T  25560424 gcaatttcttatgtaaacccatataaatgtgttgcaa 25560460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 17888500 - 17888577
Alignment:
Q  107 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    |||||||||||||||||| ||||||||| |||| ||||||||| ||||||| ||||||||  ||||||||||||||||    
T  17888500 atgggcggttctatggccaggcgaccccgggcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaa 17888577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 31377567 - 31377491
Alignment:
Q  107 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    |||||||||||||||||| ||||||||| |||| ||||||||| ||||||| ||||||||  ||||||||||||||||    
T  31377567 atgggcggttctatggcccggcgaccccgggcactcgcccgggctccggcccaaattttt-tcaatttcttatgtaaa 31377491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 11054484 - 11054448
Alignment:
Q  168 gcaatttcttatgtaaacctttataaatgtgttgcaa 204  Q
    |||||||||||||||||||||||||||||||||||||    
T  11054484 gcaatttcttatgtaaacctttataaatgtgttgcaa 11054448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 1535947 - 1535872
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||| ||||||||  |||| ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  1535947 gggcggttctaaggcccggcgacccggggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 1535872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 16338165 - 16338240
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||| ||||||||| ||||||||||||| |||||| | || ||||| ||||||| || ||||||    
T  16338165 gggcggttctaaggcccggcgaccccgggcattcgcccggattccgggccaatttttttgcaattttttgtgtaaa 16338240  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 37801216 - 37801291
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||| | ||| | |||||||||| ||||| ||||| |||||||||| |||||||||| ||||||    
T  37801216 gggcggttctaaggcccgacgatctcaggcattcgtccgggctccgggctaaattttttgcaatttcttgtgtaaa 37801291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 11054633 - 11054557
Alignment:
Q  107 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    |||||||||||||||||| |||||||||  ||| || |||||| ||||| |  ||||||| |||||||||||||||||    
T  11054633 atgggcggttctatggcccggcgaccccgagcactcacccgggctccggtc-caattttttgcaatttcttatgtaaa 11054557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 47084146 - 47084113
Alignment:
Q  151 tccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    |||||||||||||||| |||||||||||||||||    
T  47084146 tccggcctaaattttttgcaatttcttatgtaaa 47084113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 50328827 - 50328790
Alignment:
Q  168 gcaatttcttatgtaaacctttataaatgtgttgcaaa 205  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  50328827 gcaattttttatgtaaacccttataaatgtgttgcaaa 50328790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 17888647 - 17888683
Alignment:
Q  168 gcaatttcttatgtaaacctttataaatgtgttgcaa 204  Q
    |||||||||||||||||||  ||||||||||||||||    
T  17888647 gcaatttcttatgtaaacccctataaatgtgttgcaa 17888683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 20818744 - 20818668
Alignment:
Q  108 tgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||||||  | |||||| || |||| ||||||||| || | || |||||||| |||||||||| ||||||    
T  20818744 tgggcggttctatgatccggcgactccgggcactcgcccgggctctgacccaaattttttgcaatttcttttgtaaa 20818668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 31377421 - 31377385
Alignment:
Q  168 gcaatttcttatgtaaacctttataaatgtgttgcaa 204  Q
    |||||||||||||||||||  ||||||||||||||||    
T  31377421 gcaatttcttatgtaaaccgctataaatgtgttgcaa 31377385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 38860029 - 38859952
Alignment:
Q  107 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    |||||||||||||||||| ||||||||| |||| ||||||||| ||||||| ||||||||  ||||||||||||||||    
T  38860029 atgggcggttctatggcccggcgaccccgggcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaa 38859952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 42517246 - 42517321
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||| ||||||||| |||| ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  42517246 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 42517321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 47022878 - 47022803
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||| ||||||||| |||| ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  47022878 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 47022803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 10155968 - 10156043
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||| ||||||||| |||| ||||||||| ||||| | || ||||| |||||||||| ||||||    
T  10155968 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaa 10156043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 23908451 - 23908394
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaattttt 166  Q
    ||||||||||| |||| |||||||||||||| ||||||||| ||||| | ||||||||    
T  23908451 gggcggttctaaggcccggcgaccccaggcactcgcccgggctccgggccaaattttt 23908394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 29149510 - 29149567
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaattttt 166  Q
    |||||||| || ||||||||||||||||||| ||||||||| ||||| | ||||||||    
T  29149510 gggcggttttaaggcctggcgaccccaggcactcgcccgggctccggaccaaattttt 29149567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 37189815 - 37189741
Alignment:
Q  107 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||||||||||  | || |||||||||||||||||  ||||||| |||||||| |||||||||||||||||    
T  37189815 atgggcggttctatggcc-agtga-cccaggcattcgcccggactccggcccaaattttt-gcaatttcttatgtaaa 37189741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 26511615 - 26511663
Alignment:
Q  138 cattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaacc 186  Q
    |||| ||||||| |||||||||| ||||| |||||||||||||||||||    
T  26511615 catttgcccgggctccggcctaatttttttgcaatttcttatgtaaacc 26511663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 7742731 - 7742806
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||| ||||||||| |||| ||||||||| ||||  | || ||||| |||||||||| ||||||    
T  7742731 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgagcaaatttttttgcaatttcttgtgtaaa 7742806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 44107485 - 44107522
Alignment:
Q  168 gcaatttcttatgtaaacctttataaatgtgttgcaaa 205  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  44107485 gcaatttcttatgtaaaaccttataaatgtgttgcaaa 44107522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 10907635 - 10907675
Alignment:
Q  144 cccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    |||||| ||||||| |||||||| |||||||||||||||||    
T  10907635 cccgggctccggcccaaattttttgcaatttcttatgtaaa 10907675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 36539808 - 36539733
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||||||||| | | |||| ||||||||| |||||||||||||||  |||||||||||||||||    
T  36539808 gggcggttctaaggcctggcgagctcgggcagtcgcccgggctccggcctaaattttatgcaatttcttatgtaaa 36539733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 8950456 - 8950531
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||||||||||||| |||| ||||||||| || || | |||||||| |||||||||| ||||||    
T  8950456 gggcggttctaaggcctggcgaccccgggcactcgcccgggctctgggccaaattttttgcaatttcttgtgtaaa 8950531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 21853373 - 21853298
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||| ||||||||| |||| ||| ||||| ||||| | |||||||| |||||||||| ||||||    
T  21853373 gggcggttctaaggcccggcgaccccgggcactcggccgggctccgggccaaattttttgcaatttcttgtgtaaa 21853298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 40845869 - 40845944
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||| ||||||| | ||||||||||||||||||||   |||||||| ||||||| || ||||||    
T  40845869 gggcggttctaaggcccggcgacctcgggcattcgcccgggttccgggtcaaattttttgcaattttttgtgtaaa 40845944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 20382695 - 20382620
Alignment:
Q  107 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    |||||||||||||||||| ||||||||| |||| | ||||||| ||||||| ||||||||   |||||||||||||||    
T  20382695 atgggcggttctatggcc-ggcgaccccgggcacttgcccgggctccggcccaaattttt-ttaatttcttatgtaaa 20382620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 44994920 - 44994995
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||| ||||||||| || | |||| |||| ||||| | |||||||| |||||||||| ||||||    
T  44994920 gggcggttctaaggcccggcgaccccgggtactcgctcgggctccgggccaaattttttgcaatttcttgtgtaaa 44994995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 6280458 - 6280492
Alignment:
Q  171 atttcttatgtaaacctttataaatgtgttgcaaa 205  Q
    |||| ||||||||||||||||||||||||||||||    
T  6280458 attttttatgtaaacctttataaatgtgttgcaaa 6280492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 48206885 - 48206848
Alignment:
Q  168 gcaatttcttatgtaaacctttataaatgtgttgcaaa 205  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  48206885 gcaatttcttatgtaaacacttataaatgtgttgcaaa 48206848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 3597842 - 3597917
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||| |||||||||||||| ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  3597842 gggcggttctaaggcccggcgaccccaggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 3597917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 1387384 - 1387459
Alignment:
Q  168 gcaatttcttatgtaaacctttataaatgtgttgcaaannnnnnnnacccgaactttacaataatcctagctccgc 243  Q
    ||||||||||||||||||| ||| ||||||||||||||        |||||||||||||||||||||| |||||||    
T  1387384 gcaatttcttatgtaaacccttacaaatgtgttgcaaattttttttacccgaactttacaataatcctggctccgc 1387459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 42769710 - 42769785
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||| ||||||||| |||| ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  42769710 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 42769785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 14186390 - 14186465
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||| |||||||||||||| ||||||| | ||||| | |||||||| | |||||||| ||||||    
T  14186390 gggcggttctaaggcccggcgaccccaggcactcgcccgagctccgggccaaattttttgtaatttcttgtgtaaa 14186465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 29846618 - 29846543
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||| | ||||||| |||| ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  29846618 gggcggttctaaggcccgacgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 29846543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 1386112 - 1386189
Alignment:
Q  107 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    |||||||||||||||||  | ||||||| |||| ||||||||| || | || || ||||| |||||||||||||||||    
T  1386112 atgggcggttctatggctcgacgaccccgggcactcgcccgggctcggacccaatttttttgcaatttcttatgtaaa 1386189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 14941996 - 14942071
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||  ||||||||| | || ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  14941996 gggcggttctaaggctcggcgaccccggacactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 14942071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 40277240 - 40277315
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||| ||||||||| |||| | | ||||| ||||| | |||||||| ||||||| |||||||||    
T  40277240 gggcggttctaaggcccggcgaccccgggcacttgtccgggctccgggccaaattttttgcaattttttatgtaaa 40277315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 157
Target Start/End: Complemental strand, 3956750 - 3956700
Alignment:
Q  107 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcc 157  Q
    |||||||||||||||||| || |||||| |||| ||||||||| |||||||    
T  3956750 atgggcggttctatggcccggtgaccccgggcactcgcccgggctccggcc 3956700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 23685467 - 23685503
Alignment:
Q  168 gcaatttcttatgtaaacctttataaatgtgttgcaa 204  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  23685467 gcaatttcttatgtaaacccttataaatatgttgcaa 23685503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 42072604 - 42072529
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    |||||||||||||||| ||||||||| |||| ||||||||| ||||| | || ||||| |||||||||| ||||||    
T  42072604 gggcggttctatggcccggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaa 42072529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 16591361 - 16591402
Alignment:
Q  143 gcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  16591361 gcccgggttccggcctaaattttttgcaatttcttatgtaaa 16591402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 35806970 - 35806895
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||| ||||||||| |||| ||| ||||| ||||| | |||||||| |||||||||| ||||||    
T  35806970 gggcggttctaaggcccggcgaccccgggcactcggccgggctccgggccaaattttttgcaatttcttgtgtaaa 35806895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 16591440 - 16591476
Alignment:
Q  168 gcaatttcttatgtaaacctttataaatgtgttgcaa 204  Q
    ||||||||||||||||||| |||||||||||||||||    
T  16591440 gcaatttcttatgtaaacccttataaatgtgttgcaa 16591476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 22324772 - 22324697
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||| ||| ||||| |||| ||||||||| ||||| | |||||||| | |||||||| ||||||    
T  22324772 gggcggttctaaggcccggcaaccccgggcactcgcccgggctccgggccaaattttttgtaatttcttgtgtaaa 22324697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 42014048 - 42013973
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||| ||||||||| |||| | | ||||||| ||| | |||||||| |||||||||| ||||||    
T  42014048 gggcggttctaaggcccggcgaccccgggcacttgtccgggtttcgggccaaattttttgcaatttcttgtgtaaa 42013973  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 44164695 - 44164770
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||| ||||||||| |||| ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  44164695 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 44164770  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 19334510 - 19334587
Alignment:
Q  107 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    |||||||||||||||||| ||||||||| | || || ||| |||| ||||| || ||||| |||||||||||||||||    
T  19334510 atgggcggttctatggcccggcgaccccggtcactcccccaggtttcggcccaatttttttgcaatttcttatgtaaa 19334587  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 34707292 - 34707217
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| | || ||||||||| |||| ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  34707292 gggcggttctaagacccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 34707217  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 10576849 - 10576774
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| || | ||||||||| |||| || |||||| ||||| | |||||||| |||||||||| ||||||    
T  10576849 gggcggttctaaggtccggcgaccccgggcactcacccgggctccgggccaaattttttgcaatttcttgtgtaaa 10576774  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 29238095 - 29238170
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||| ||| ||||| |||| ||||||||| ||||| | || ||||| |||||||||| ||||||    
T  29238095 gggcggttctaaggcccggcaaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaa 29238170  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 34259694 - 34259619
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||| |||||| || |||| ||||||||| ||||| | || ||||| |||||||||| ||||||    
T  34259694 gggcggttctaaggcccggcgactccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaa 34259619  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 41853262 - 41853212
Alignment:
Q  134 caggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    |||||| ||||||||| ||||||| |||||||| |||||||||||| ||||    
T  41853262 caggcactcgcccgggctccggcccaaattttttgcaatttcttatttaaa 41853212  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 10334209 - 10334173
Alignment:
Q  168 gcaatttcttatgtaaacctttataaatgtgttgcaa 204  Q
    |||||||||||||||||||  ||||||||||||||||    
T  10334209 gcaatttcttatgtaaacccctataaatgtgttgcaa 10334173  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 17303212 - 17303248
Alignment:
Q  168 gcaatttcttatgtaaacctttataaatgtgttgcaa 204  Q
    |||||||||||||||||||  ||||||||||||||||    
T  17303212 gcaatttcttatgtaaaccactataaatgtgttgcaa 17303248  T

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Target: scaffold0079 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 54695 - 54620
Alignment:
Q  109 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 184  Q
    ||||||||||| |||| ||||||||| ||||||||||||| |||||| | || ||||| ||||||| || ||||||    
T  54695 gggcggttctaaggcccggcgaccccgggcattcgcccggattccgggccaatttttttgcaattttttgtgtaaa 54620  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 85542 - 85505
Alignment:
Q  168 gcaatttcttatgtaaacctttataaatgtgttgcaaa 205  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  85542 gcaatttcttatgtaaacctctataaatatgttgcaaa 85505  T

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