View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0943_low_37 (Length: 278)
Name: NF0943_low_37
Description: NF0943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0943_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 126 - 251
Target Start/End: Original strand, 4235341 - 4235466
Alignment:
| Q |
126 |
tcttcaatatttcttcctaaaattcaaaaaatcaagtaatggtttatctgagactggtataaacttcaccacaaatccaattggccaagaaacagcagca |
225 |
Q |
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| T |
4235341 |
tcttcaatatcttttcctaaaattcaaaaaatcaagtaaaggtttgtctgagactggtataaacttcaccacaaatccaattggccaagaaacagcagca |
4235440 |
T |
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| Q |
226 |
aaaccaatacaaacaatccactctct |
251 |
Q |
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|||||||||||||||||||||||||| |
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| T |
4235441 |
aaaccaatacaaacaatccactctct |
4235466 |
T |
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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 251
Target Start/End: Original strand, 6184489 - 6184590
Alignment:
| Q |
150 |
caaaaaatcaagtaatggtttatctgagactggtataaacttcaccacaaatccaattggccaagaaacagcagcaaaaccaatacaaacaatccactct |
249 |
Q |
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|||||||||||| | |||||||||||| || ||||| |||||||| | ||| ||||||||||||||||||||| ||||||||||||||| |||||| ||| |
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| T |
6184489 |
caaaaaatcaagaagtggtttatctgaaacaggtatcaacttcacaagaaaaccaattggccaagaaacagcaccaaaaccaatacaaataatccattct |
6184588 |
T |
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| Q |
250 |
ct |
251 |
Q |
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|| |
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| T |
6184589 |
ct |
6184590 |
T |
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