View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0943_low_40 (Length: 266)
Name: NF0943_low_40
Description: NF0943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0943_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 50 - 228
Target Start/End: Complemental strand, 8646997 - 8646819
Alignment:
| Q |
50 |
attatagactagtaatcaacattttaaatataaattttacaatctagttaatcactttttgaatagatacaaacctattgtggattggagctatcataat |
149 |
Q |
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| T |
8646997 |
attatagactagtaatcaacattttaaatataaattttacaatctagttaatcactttttgaatagatacaaacctattgtggattggagctatcataat |
8646898 |
T |
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| Q |
150 |
aaacctttgattaacaaaactcattctcatctcatttgtccttctattgaatttgaataaacacatgactcataacatt |
228 |
Q |
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| T |
8646897 |
aaacctttgattaacaaaactcattctcatctcatttgtccttctattgaatttgaataaacacatgactcataacatt |
8646819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 126 - 228
Target Start/End: Original strand, 8611729 - 8611831
Alignment:
| Q |
126 |
attgtggattggagctatcataataaacctttgattaacaaaactcattctcatctcatttgtccttctattgaatttgaataaacacatgactcataac |
225 |
Q |
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| T |
8611729 |
attgtggattggagctatcatagtaaacctttgattagcaaaactcattctcatctcatttgtccttctattgaatttgaataaacacatgactcataac |
8611828 |
T |
|
| Q |
226 |
att |
228 |
Q |
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||| |
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| T |
8611829 |
att |
8611831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 128 - 228
Target Start/End: Complemental strand, 8555789 - 8555689
Alignment:
| Q |
128 |
tgtggattggagctatcataataaacctttgattaacaaaactcattctcatctcatttgtccttctattgaatttgaataaacacatgactcataacat |
227 |
Q |
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| T |
8555789 |
tgtggattggagctatcacaataaccctttgattagcaaaactcattctcatctcatttgtccttcatttgaatttgaataggcacatgactcatgacat |
8555690 |
T |
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| Q |
228 |
t |
228 |
Q |
| |
|
| |
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|
| T |
8555689 |
t |
8555689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 8556933 - 8557033
Alignment:
| Q |
128 |
tgtggattggagctatcataataaacctttgattaacaaaactcattctcatctcatttgtccttctattgaatttgaataaacacatgactcataacat |
227 |
Q |
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|||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||| |||| |
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| T |
8556933 |
tgtggattggagctatcacaataaatctttgattagcaaaactcattctcatctcatttatccttcttttgaatttgaataggcacatgactcatgacat |
8557032 |
T |
|
| Q |
228 |
t |
228 |
Q |
| |
|
| |
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|
| T |
8557033 |
t |
8557033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 8567318 - 8567241
Alignment:
| Q |
126 |
attgtggattggagctatcataataaacctttgattaacaaaactcattctcatctcatttgtccttctattgaattt |
203 |
Q |
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|||||||| || |||||||| ||||| |||||||||| |||||||||||||||||||||||||||||| || ||||| |
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| T |
8567318 |
attgtggactgaagctatcacaataaccctttgattaggaaaactcattctcatctcatttgtccttctttttaattt |
8567241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 8588989 - 8588926
Alignment:
| Q |
153 |
cctttgattaacaaaactcattctcatctcatttgtccttctattgaatttgaataaacacatg |
216 |
Q |
| |
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||||| |||| |||||||||| |||||||||| ||| ||||| |||||||||||| | |||||| |
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| T |
8588989 |
ccttttattaccaaaactcatcctcatctcatatgttcttcttttgaatttgaattagcacatg |
8588926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 11831211 - 11831281
Alignment:
| Q |
51 |
ttatagactagtaatcaacattttaaatataaattttacaatctag-ttaatcactttttgaatagataca |
120 |
Q |
| |
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|||| ||||||||||| ||||||||| |||| ||| ||||||||| |||||||| |||||| |||||||| |
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| T |
11831211 |
ttatcgactagtaatcgacattttaagtatatttttcacaatctagcttaatcacgttttgattagataca |
11831281 |
T |
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